MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:8.4 nTPM
HPA:8.4 nTPM
GTEx:298.2 nTPM
FANTOM5:687.4 Scaled Tags Per Million
Pig:140.0 nTPM
Mouse:363.4 nTPM
Allen mouse:9.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 8.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 7.4
2411 Female, age 72, unknown 13.7
2019 Male, age 18, unknown 13.4
1830 Male, age 51, unknown 9.1
1833 Male, age 53, unknown 7.4
1827 Male, age 72, unknown 7.1
1870 Female, age 42, unknown 6.6
2586 Male, age 75, left hemisphere 5.0
2666 Male, age 74, left hemisphere 4.8
2828 Female, age 72, unknown 4.8
2219 Male, age 76, both hemispheres 2.3
Dorsal raphe nucleus
nTPM: 7.4
2750 Male, age 76, both hemispheres 10.5
2016 Female, age 72, unknown 8.5
1828 Male, age 53, unknown 6.7
2298 Female, age 72, unknown 6.1
2047 Male, age 72, unknown 4.9
Inferior colliculus
nTPM: 4.7
2097 Female, age 72, unknown 6.4
1890 Male, age 53, unknown 5.3
1848 Female, age 42, unknown 3.8
2849 Male, age 72, unknown 3.5
Median raphe nucleus
nTPM: 3.0
2220 Male, age 76, midline 3.0
Pedunculopontine tegmental nucleus
nTPM: 4.7
1921 Female, age 85, both hemispheres 5.3
2334 Male, age 80, both hemispheres 4.7
2338 Male, age 61, both hemispheres 4.2
Periaquaductal grey, anterior
nTPM: 4.4
2502 Female, age 75, unknown 5.6
1947 Male, age 18, unknown 4.2
1795 Male, age 51, unknown 3.4
Periaquaductal grey, dorsal
nTPM: 3.3
2464 Female, age 72, unknown 4.3
1831 Male, age 72, unknown 3.6
2850 Male, age 76, both hemispheres 3.0
1840 Male, age 53, unknown 2.2
Periaquaductal grey, lateral
nTPM: 4.3
2053 Male, age 18, unknown 4.6
2272 Male, age 74, both hemispheres 4.5
2140 Male, age 76, both hemispheres 3.6
Pretectal area
nTPM: 5.0
2407 Male, age 75, both hemispheres 10.0
1815 Male, age 53, unknown 8.1
2007 Male, age 72, unknown 6.4
2667 Female, age 75, unknown 4.8
2273 Male, age 74, both hemispheres 4.6
1817 Female, age 42, unknown 4.4
2316 Male, age 76, right hemisphere 4.1
2224 Female, age 72, unknown 3.4
1944 Female, age 72, unknown 3.0
1816 Male, age 51, unknown 2.9
2825 Male, age 18, unknown 2.8
Red nucleus
nTPM: 8.4
2503 Female, age 72, unknown 11.4
2823 Male, age 76, right hemisphere 11.2
1865 Male, age 51, unknown 11.0
1904 Male, age 53, unknown 10.0
2769 Male, age 72, unknown 8.3
2588 Male, age 74, left hemisphere 8.1
2584 Male, age 75, left hemisphere 7.9
1821 Female, age 72, unknown 7.1
2785 Male, age 18, unknown 7.0
2725 Female, age 75, unknown 6.5
1954 Female, age 42, unknown 6.4
2227 Male, age 72, unknown 6.0
Substantia nigra
nTPM: 5.7
2583 Male, age 75, right hemisphere 8.1
1889 Female, age 72, unknown 8.0
2699 Male, age 18, unknown 7.6
1851 Male, age 51, unknown 6.2
2241 Male, age 72, unknown 6.2
2409 Female, age 72, unknown 5.2
2590 Female, age 75, unknown 5.1
1941 Male, age 53, unknown 4.6
1916 Female, age 42, unknown 3.2
2665 Male, age 74, both hemispheres 3.0
Superior colliculus
nTPM: 6.5
1895 Male, age 76, right hemisphere 10.1
1913 Female, age 42, unknown 9.6
1995 Male, age 72, unknown 6.8
2087 Female, age 72, unknown 6.6
2587 Male, age 74, left hemisphere 6.4
1839 Male, age 51, unknown 6.1
2668 Female, age 75, unknown 5.5
2664 Male, age 75, both hemispheres 5.1
1796 Male, age 53, unknown 4.4
2261 Male, age 18, unknown 4.1
Ventral tegmental area
nTPM: 5.1
2218 Male, age 76, both hemispheres 6.6
1915 Female, age 42, unknown 5.6
2021 Male, age 53, unknown 5.3
1942 Male, age 51, unknown 5.1
2410 Female, age 72, unknown 4.4
2223 Female, age 72, unknown 3.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 298.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 298.2
Samples: 139

Max nTPM: 1120.4
Min nTPM: 55.0
Std nTPM: 177.9
Median nTPM: 245.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 1120.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 934.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 852.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 752.2
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 736.1
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 698.1
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 683.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 619.4
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 612.7
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 609.0
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 605.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 687.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 687.4
FF:10158-103A5 76 years, female 687.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 140.0
Pig sample Sample description nTPM
Midbrain
nTPM: 137.2
Samples: 4

Max nTPM: 249.8
Min nTPM: 70.3
Sample A Female 249.8
Sample B Female 144.0
Sample C Male 70.3
Sample D Male 84.5
Periaqueductal gray
nTPM: 93.0
Samples: 3

Max nTPM: 113.4
Min nTPM: 65.5
Sample B Female 113.4
Sample C Male 65.5
Sample D Male 100.1
Substantia nigra
nTPM: 140.0
Samples: 4

Max nTPM: 242.9
Min nTPM: 86.0
Sample A Female 123.1
Sample B Female 86.0
Sample C Male 108.0
Sample D Male 242.9
Superior colliculi
nTPM: 102.8
Samples: 4

Max nTPM: 141.1
Min nTPM: 47.0
Sample A Female 114.1
Sample B Female 47.0
Sample C Male 109.1
Sample D Male 141.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 363.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 363.4
Samples: 4

Max nTPM: 405.4
Min nTPM: 315.3
Sample A Male 342.6
Sample B Male 315.3
Sample C Female 405.4
Sample D Female 390.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 9.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.6
70946633 Antisense, RP_050505_01_F05, Mouse strain C57BL/6J (56 days, male) 9.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.