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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:8.1 nTPM
HPA:8.1 nTPM
GTEx:678.2 nTPM
FANTOM5:397.3 Scaled Tags Per Million
Pig:141.3 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 8.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 7.0
1981 Female, age 72, midline 8.7
2194 Female, age 79, both hemispheres 7.7
2048 Male, age 55, midline 7.1
2816 Male, age 47, midline 6.6
2565 Male, age 75, midline 5.0
Cervical spinal cord, dorsal horn
nTPM: 8.1
2173 Female, age 72, unknown 14.2
2069 Male, age 47, both hemispheres 12.6
1877 Male, age 55, unknown 7.4
2296 Male, age 66, both hemispheres 6.4
2297 Male, age 75, both hemispheres 4.8
2721 Male, age 90, both hemispheres 3.2
Cervical spinal cord, ventral horn
nTPM: 7.8
2820 Female, age 79, both hemispheres 10.4
2295 Male, age 66, both hemispheres 8.4
2480 Male, age 75, both hemispheres 8.2
2098 Female, age 72, unknown 7.8
2809 Male, age 90, both hemispheres 6.6
2068 Male, age 55, unknown 5.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 678.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 678.2
Samples: 159

Max nTPM: 1413.2
Min nTPM: 171.7
Std nTPM: 255.7
Median nTPM: 659.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 1413.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 1311.9
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 1294.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 1155.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 1153.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 1121.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 1111.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 1100.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1098.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 1092.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 1091.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 1072.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 1068.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 1060.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1049.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 1039.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1035.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 1031.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1031.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 1013.7
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 1006.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1002.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 988.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 979.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 970.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 969.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 957.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 935.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 932.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 930.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 921.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 919.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 918.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 906.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 897.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 892.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 890.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 860.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 851.4
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 851.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 851.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 845.2
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 840.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 831.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 830.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 797.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 796.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 792.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 781.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 772.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 770.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 767.2
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 766.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 763.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 760.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 757.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 749.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 741.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 735.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 734.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 733.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 730.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 720.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 713.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 712.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 711.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 709.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 704.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 695.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 693.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 691.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 684.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 683.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 680.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 679.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 675.6
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 671.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 664.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 662.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 659.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 655.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 652.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 639.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 638.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 632.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 631.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 625.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 624.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 616.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 616.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 610.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 605.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 605.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 602.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 600.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 594.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 589.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 588.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 585.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 584.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 576.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 575.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 574.2
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 572.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 570.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 568.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 564.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 559.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 557.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 550.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 549.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 548.6
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 547.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 542.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 541.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 535.4
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 529.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 517.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 512.9
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 508.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 504.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 496.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 495.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 492.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 492.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 478.2
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 465.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 460.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 457.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 456.6
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 456.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 447.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 410.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 409.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 407.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 397.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 397.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 390.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 389.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 354.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 353.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 352.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 343.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 337.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 337.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 336.3
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 329.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 297.4
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 293.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 269.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 252.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 239.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 225.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 218.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 215.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 210.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 203.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 190.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 171.7
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 397.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 397.3
FF:10181-103D1 60 years, female 490.9
FF:10159-103A6 76 years, female 303.7

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 141.3
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 125.4
Samples: 4

Max nTPM: 147.8
Min nTPM: 78.9
Sample A Female 147.8
Sample B Female 132.9
Sample C Male 78.9
Sample D Male 141.8
Ventral spinal cord
nTPM: 141.4
Samples: 4

Max nTPM: 159.9
Min nTPM: 112.5
Sample A Female 156.1
Sample B Female 136.9
Sample C Male 112.5
Sample D Male 159.9

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