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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:3255.7 nTPM
HPA:3255.7 nTPM
GTEx:3688.6 nTPM
FANTOM5:19.9 Scaled Tags Per Million
Pig:767.1 nTPM
Mouse:1894.3 nTPM
Allen mouse:35.2 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 3255.7
Sample id Sample description nTPM
Amygdala
nTPM: 3255.7
2695 Female, age 67, right hemisphere 3651.4
2514 Male, age 75, right hemisphere 3208.3
1987 Female, age 91, left hemisphere 3197.7
2814 Male, age 76, right hemisphere 3175.6
2517 Female, age 94, left hemisphere 3045.3
Basal amygdala
nTPM: 3107.0
2827 Female, age 67, right hemisphere 3418.0
2110 Male, age 80, left hemisphere 3158.6
2685 Female, age 94, left hemisphere 3079.4
1955 Male, age 76, both hemispheres 3053.2
2609 Male, age 75, right hemisphere 3005.8
2243 Female, age 91, right hemisphere 2926.8
Central amygdala
nTPM: 3178.9
2826 Female, age 94, left hemisphere 3617.4
2515 Male, age 75, right hemisphere 3183.3
1905 Male, age 76, both hemispheres 3126.8
2239 Male, age 80, left hemisphere 3008.0
2701 Female, age 91, right hemisphere 2958.9
Corticomedial amygdala
nTPM: 3041.6
2829 Male, age 80, left hemisphere 3120.1
2428 Male, age 75, right hemisphere 3096.7
2535 Female, age 67, right hemisphere 3065.9
2240 Male, age 76, both hemispheres 3022.5
2242 Female, age 91, right hemisphere 3002.3
2429 Female, age 94, left hemisphere 2942.1
Lateral amygdala
nTPM: 3250.1
2830 Female, age 67, right hemisphere 3744.3
2534 Female, age 94, left hemisphere 3290.9
2516 Male, age 75, right hemisphere 3242.8
1883 Male, age 76, both hemispheres 3170.6
2256 Male, age 80, left hemisphere 3138.3
2255 Female, age 91, right hemisphere 2913.6
Stria terminalis, bed nucleus
nTPM: 3013.8
1974 Female, age 91, both hemispheres 3148.9
2486 Female, age 94, both hemispheres 2966.2
2201 Male, age 74, unknown 2926.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 3688.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 3688.6
Samples: 152

Max nTPM: 10194.8
Min nTPM: 1731.4
Std nTPM: 1278.7
Median nTPM: 3348.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 10194.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 8878.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 7877.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 7233.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 6992.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 6609.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 6448.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 5793.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 5667.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 5615.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 5595.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 5531.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 5503.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 5293.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 5183.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 5121.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 5111.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 5070.4
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 4979.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 4967.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 4930.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 4889.4
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 4888.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 4679.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 4670.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 4612.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 4602.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 4493.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 4451.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 4447.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 4443.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 4409.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 4409.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 4363.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 4352.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 4348.5
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 4296.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 4216.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 4200.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 4185.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 4179.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 4103.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 4072.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 4039.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 4023.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 4011.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 3977.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 3938.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 3936.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 3936.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 3909.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 3855.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 3845.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 3814.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 3807.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 3775.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 3742.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 3738.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 3711.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 3705.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 3693.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 3677.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 3671.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 3636.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 3622.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 3561.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 3538.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 3488.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 3476.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 3438.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 3433.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 3417.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 3407.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 3381.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 3368.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 3359.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 3338.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 3313.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 3312.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 3312.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 3295.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 3276.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 3274.2
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 3264.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 3257.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 3250.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 3233.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 3230.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 3219.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 3191.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 3182.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 3174.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 3172.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 3164.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 3132.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 3110.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 3107.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 3099.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 3053.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 3047.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 3011.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 3009.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 2991.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 2939.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 2930.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 2915.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 2914.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 2902.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 2868.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 2833.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 2825.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 2777.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 2768.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 2760.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 2751.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 2748.8
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 2735.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 2723.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 2719.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 2716.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 2709.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 2697.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 2693.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 2689.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 2677.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 2661.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 2635.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 2620.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 2614.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 2582.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 2581.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 2581.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 2575.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 2565.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 2563.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 2542.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 2535.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 2531.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 2500.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 2464.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 2459.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 2458.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 2430.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 2375.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 2361.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 2344.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 2337.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 2327.4
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 2154.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 2122.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 1824.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 1731.4
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 19.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 19.9
FF:10151-102I7 76 years, female 19.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 767.1
Pig sample Sample description nTPM
Amygdala
nTPM: 767.1
Samples: 4

Max nTPM: 1053.0
Min nTPM: 444.3
Sample A Female 963.5
Sample B Female 1053.0
Sample C Male 607.6
Sample D Male 444.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1894.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 1894.3
Samples: 4

Max nTPM: 1978.7
Min nTPM: 1767.1
Sample A Male 1767.1
Sample B Male 1978.7
Sample C Female 1970.2
Sample D Female 1861.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 35.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 35.2
512993 Antisense, RP_040809_02_F11, Mouse strain C57BL/6J (56 days, male) 39.6
77792010 Antisense, RP_070208_04_C12, Mouse strain C57BL/6J (56 days, male) 30.8

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