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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:273.3 nTPM
GTEx:273.3 nTPM
FANTOM5:11.2 Scaled Tags Per Million
Pig:67.7 nTPM
Mouse:755.9 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 273.3
GTEx sample id Sample description nTPM
Retina
Average nTPM: 273.3
Samples: 105

Max nTPM: 453.6
Min nTPM: 153.2
Std nTPM: 52.7
Median nTPM:
452_1 88 years, female 453.6
117_1 61 years, male 424.7
42_1 85 years, male 421.1
526_1 61 years, male 406.1
506_1 65 years, male 378.5
153_1 70 years, female 371.7
120_1 70 years, female 364.2
351_1 91 years, male 363.9
501_1 88 years, male 351.3
265_1 87 years, male 345.6
313_1 79 years, female 343.0
109_1 81 years, female 342.4
264_1 73 years, female 337.6
17_1 71 years, male 319.3
4_1 88 years, female 318.3
314_1 67 years, male 318.3
377_1 82 years, female 316.0
404_1 82 years, female 315.2
2_1 77 years, female 313.4
414_1 84 years, female 312.4
308_1 70 years, female 307.8
499_1 55 years, female 305.3
320_1 89 years, female 305.1
162_1 79 years, female 305.0
254_1 77 years, female 303.3
491_1 89 years, female 300.4
518_1 75 years, female 300.1
137_1 83 years, male 299.6
288_1 66 years, female 299.4
307_1 66 years, female 298.5
480_1 63 years, male 296.2
142_1 61 years, female 296.0
376_1 75 years, female 295.1
99_1 64 years, male 292.2
321_1 62 years, female 292.0
189_1 76 years, male 291.9
315_1 62 years, female 290.8
375_1 74 years, female 284.0
115_1 83 years, male 282.0
237_1 82 years, male 279.3
384_1 83 years, male 279.1
145_1 84 years, male 278.5
41_1 94 years, female 278.4
319_1 81 years, male 276.4
173_1 67 years, male 275.9
466_1 57 years, female 275.6
35_1 74 years, female 274.5
126_1 63 years, male 270.9
286_1 68 years, female 270.9
406_1 79 years, male 270.5
217_1 76 years, male 268.7
6_1 73 years, female 267.6
413_1 59 years, female 266.5
18_1 88 years, male 265.6
295_1 61 years, female 265.4
354_1 81 years, female 264.2
243_1 75 years, male 262.4
177_1 74 years, male 260.5
81_1 67 years, male 257.8
172_1 72 years, female 255.7
503_1 68 years, male 253.1
119_1 70 years, female 252.1
389_1 86 years, female 250.0
495_1 57 years, female 250.0
468_1 89 years, male 248.7
517_1 88 years, male 246.2
396_1 62 years, male 244.9
229_1 69 years, female 244.4
394_1 75 years, female 244.1
316_1 62 years, male 243.7
9_1 66 years, female 243.5
324_1 76 years, male 242.2
356_1 87 years, female 242.0
139_1 64 years, female 239.7
353_1 82 years, female 239.1
348_1 84 years, male 238.1
32_1 67 years, male 236.8
379_1 60 years, male 236.0
318_1 68 years, male 235.9
415_1 77 years, female 235.4
149_1 88 years, male 234.8
335_1 73 years, female 234.0
163_1 78 years, male 232.8
293_1 68 years, female 231.7
349_1 83 years, male 231.6
246_1 77 years, male 231.0
322_1 76 years, male 230.3
43_1 64 years, female 229.4
386_1 76 years, male 228.3
355_1 70 years, female 222.0
317_1 60 years, male 220.5
266_1 85 years, male 219.2
350_1 84 years, female 218.7
89_1 63 years, male 218.0
292_1 71 years, male 217.8
347_1 72 years, male 217.0
405_1 91 years, male 217.0
311_1 78 years, male 216.3
447_1 81 years, male 212.0
251_1 78 years, male 207.7
425_1 59 years, female 205.6
291_1 76 years, male 199.8
352_1 62 years, male 186.3
490_1 67 years, female 184.6
218_1 71 years, female 153.2
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 11.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 11.2
FF:10030-101E3 24-65 years, mixed 11.2

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 67.7
Pig sample Sample description nTPM
Retina
nTPM: 67.7
Samples: 4

Max nTPM: 87.8
Min nTPM: 58.8
Sample A Female 64.3
Sample B Female 87.8
Sample C Male 59.9
Sample D Male 58.8

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 755.9
Mouse sample Sample description nTPM
Retina
nTPM: 755.9
Samples: 4

Max nTPM: 1214.8
Min nTPM: 537.3
Sample A Male 711.2
Sample B Male 537.3
Sample C Female 1214.8
Sample D Female 560.4

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by the Knut & Alice Wallenberg Foundation.