MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:104.5 nTPM
HPA:104.5 nTPM
GTEx:134.4 nTPM
FANTOM5:86.2 Scaled Tags Per Million
Pig:46.2 nTPM
Mouse:38.6 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 104.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 63.5
2411 Female, age 72, unknown 85.2
2219 Male, age 76, both hemispheres 73.4
1833 Male, age 53, unknown 68.8
1870 Female, age 42, unknown 68.0
2586 Male, age 75, left hemisphere 65.3
1830 Male, age 51, unknown 63.7
2666 Male, age 74, left hemisphere 55.7
2828 Female, age 72, unknown 54.4
1827 Male, age 72, unknown 54.0
2019 Male, age 18, unknown 46.9
Dorsal raphe nucleus
nTPM: 93.5
2047 Male, age 72, unknown 125.5
2298 Female, age 72, unknown 108.6
2750 Male, age 76, both hemispheres 86.3
1828 Male, age 53, unknown 77.9
2016 Female, age 72, unknown 69.3
Inferior colliculus
nTPM: 58.8
2849 Male, age 72, unknown 61.8
2097 Female, age 72, unknown 60.3
1890 Male, age 53, unknown 60.1
1848 Female, age 42, unknown 53.0
Median raphe nucleus
nTPM: 98.2
2220 Male, age 76, midline 98.2
Pedunculopontine tegmental nucleus
nTPM: 83.8
2334 Male, age 80, both hemispheres 99.1
1921 Female, age 85, both hemispheres 88.2
2338 Male, age 61, both hemispheres 64.0
Periaquaductal grey, anterior
nTPM: 61.4
1947 Male, age 18, unknown 63.2
1795 Male, age 51, unknown 62.6
2502 Female, age 75, unknown 58.4
Periaquaductal grey, dorsal
nTPM: 65.3
1840 Male, age 53, unknown 73.2
2850 Male, age 76, both hemispheres 70.5
2464 Female, age 72, unknown 65.0
1831 Male, age 72, unknown 52.6
Periaquaductal grey, lateral
nTPM: 59.7
2053 Male, age 18, unknown 63.8
2140 Male, age 76, both hemispheres 59.9
2272 Male, age 74, both hemispheres 55.5
Pretectal area
nTPM: 54.6
2825 Male, age 18, unknown 85.5
2224 Female, age 72, unknown 83.8
2667 Female, age 75, unknown 53.8
2273 Male, age 74, both hemispheres 50.6
2407 Male, age 75, both hemispheres 50.5
2316 Male, age 76, right hemisphere 49.6
1944 Female, age 72, unknown 46.7
1815 Male, age 53, unknown 45.3
2007 Male, age 72, unknown 45.3
1817 Female, age 42, unknown 45.1
1816 Male, age 51, unknown 44.5
Red nucleus
nTPM: 59.6
2584 Male, age 75, left hemisphere 72.2
2227 Male, age 72, unknown 63.7
1821 Female, age 72, unknown 63.3
1904 Male, age 53, unknown 63.2
1954 Female, age 42, unknown 63.2
2769 Male, age 72, unknown 63.1
2725 Female, age 75, unknown 57.7
1865 Male, age 51, unknown 56.5
2503 Female, age 72, unknown 56.0
2588 Male, age 74, left hemisphere 55.2
2823 Male, age 76, right hemisphere 54.6
2785 Male, age 18, unknown 46.4
Substantia nigra
nTPM: 104.5
1916 Female, age 42, unknown 146.0
2699 Male, age 18, unknown 141.2
1851 Male, age 51, unknown 133.9
2241 Male, age 72, unknown 127.3
2665 Male, age 74, both hemispheres 99.0
2409 Female, age 72, unknown 98.0
1941 Male, age 53, unknown 84.3
2583 Male, age 75, right hemisphere 78.9
2590 Female, age 75, unknown 71.8
1889 Female, age 72, unknown 64.8
Superior colliculus
nTPM: 53.3
2668 Female, age 75, unknown 60.1
1839 Male, age 51, unknown 57.9
1796 Male, age 53, unknown 56.9
2587 Male, age 74, left hemisphere 55.2
1995 Male, age 72, unknown 54.0
2261 Male, age 18, unknown 50.9
1913 Female, age 42, unknown 50.3
2664 Male, age 75, both hemispheres 50.3
1895 Male, age 76, right hemisphere 49.9
2087 Female, age 72, unknown 47.5
Ventral tegmental area
nTPM: 94.7
1915 Female, age 42, unknown 118.7
2410 Female, age 72, unknown 103.3
2218 Male, age 76, both hemispheres 92.0
1942 Male, age 51, unknown 89.7
2021 Male, age 53, unknown 89.6
2223 Female, age 72, unknown 74.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 134.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 134.4
Samples: 139

Max nTPM: 807.8
Min nTPM: 18.1
Std nTPM: 106.5
Median nTPM: 106.0
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 807.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 510.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 462.6
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 393.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 381.6
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 354.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 332.8
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 297.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 297.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 296.1
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 286.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 86.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 86.2
FF:10158-103A5 76 years, female 86.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 46.2
Pig sample Sample description nTPM
Midbrain
nTPM: 23.7
Samples: 4

Max nTPM: 40.3
Min nTPM: 7.5
Sample A Female 8.6
Sample B Female 40.3
Sample C Male 7.5
Sample D Male 38.4
Periaqueductal gray
nTPM: 39.9
Samples: 3

Max nTPM: 66.9
Min nTPM: 26.4
Sample B Female 26.4
Sample C Male 66.9
Sample D Male 26.5
Substantia nigra
nTPM: 46.2
Samples: 4

Max nTPM: 71.1
Min nTPM: 6.8
Sample A Female 69.4
Sample B Female 37.5
Sample C Male 71.1
Sample D Male 6.8
Superior colliculi
nTPM: 16.2
Samples: 4

Max nTPM: 28.9
Min nTPM: 3.2
Sample A Female 28.9
Sample B Female 23.8
Sample C Male 3.2
Sample D Male 8.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 38.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 38.6
Samples: 4

Max nTPM: 43.7
Min nTPM: 29.6
Sample A Male 40.7
Sample B Male 40.5
Sample C Female 29.6
Sample D Female 43.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
75080750 Antisense, RP_060412_04_G11, Mouse strain C57BL/6J (56 days, male) 0.9
79762714 Antisense, RP_071204_04_D12, Mouse strain C57BL/6J (56 days, male) 0.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.