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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:4204.9 nTPM
GTEx:4204.9 nTPM
FANTOM5:3532.4 Scaled Tags Per Million
Pig:10.0 nTPM
Mouse:22.7 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 4204.9
GTEx sample id Sample description nTPM
Retina
Average nTPM: 4204.9
Samples: 105

Max nTPM: 8795.9
Min nTPM: 1491.4
Std nTPM: 1411.2
Median nTPM:
308_1 70 years, female 8795.9
384_1 83 years, male 8475.9
41_1 94 years, female 7100.0
322_1 76 years, male 6764.5
35_1 74 years, female 6649.3
237_1 82 years, male 6635.9
218_1 71 years, female 6584.5
173_1 67 years, male 6529.6
319_1 81 years, male 6240.9
295_1 61 years, female 6150.5
447_1 81 years, male 5996.4
311_1 78 years, male 5966.7
42_1 85 years, male 5966.3
313_1 79 years, female 5954.4
137_1 83 years, male 5902.7
452_1 88 years, female 5750.5
17_1 71 years, male 5721.5
495_1 57 years, female 5701.4
264_1 73 years, female 5630.6
394_1 75 years, female 5613.4
119_1 70 years, female 5590.8
307_1 66 years, female 5531.4
317_1 60 years, male 5511.2
315_1 62 years, female 5374.9
389_1 86 years, female 5089.9
145_1 84 years, male 5051.0
288_1 66 years, female 5033.5
375_1 74 years, female 4993.0
99_1 64 years, male 4969.5
4_1 88 years, female 4910.3
353_1 82 years, female 4901.7
139_1 64 years, female 4873.2
89_1 63 years, male 4818.7
501_1 88 years, male 4753.2
351_1 91 years, male 4713.3
120_1 70 years, female 4663.5
320_1 89 years, female 4663.3
348_1 84 years, male 4563.4
117_1 61 years, male 4508.2
406_1 79 years, male 4500.4
480_1 63 years, male 4473.3
347_1 72 years, male 4464.0
314_1 67 years, male 4379.5
142_1 61 years, female 4332.4
243_1 75 years, male 4299.7
376_1 75 years, female 4204.0
354_1 81 years, female 4165.5
293_1 68 years, female 4120.6
2_1 77 years, female 4105.4
506_1 65 years, male 4097.4
318_1 68 years, male 4073.6
396_1 62 years, male 4017.0
356_1 87 years, female 3912.2
379_1 60 years, male 3851.7
321_1 62 years, female 3843.7
503_1 68 years, male 3833.9
491_1 89 years, female 3816.8
189_1 76 years, male 3794.1
251_1 78 years, male 3772.4
172_1 72 years, female 3757.4
386_1 76 years, male 3754.9
291_1 76 years, male 3707.6
163_1 78 years, male 3694.7
490_1 67 years, female 3631.4
254_1 77 years, female 3628.9
405_1 91 years, male 3598.4
414_1 84 years, female 3571.3
153_1 70 years, female 3537.3
349_1 83 years, male 3452.1
324_1 76 years, male 3423.6
518_1 75 years, female 3403.0
6_1 73 years, female 3370.2
115_1 83 years, male 3361.1
350_1 84 years, female 3321.6
81_1 67 years, male 3314.1
18_1 88 years, male 3268.4
109_1 81 years, female 3251.5
43_1 64 years, female 3237.4
162_1 79 years, female 3234.5
377_1 82 years, female 3183.3
404_1 82 years, female 3103.1
316_1 62 years, male 3032.8
355_1 70 years, female 2968.4
177_1 74 years, male 2963.2
526_1 61 years, male 2942.7
126_1 63 years, male 2935.0
266_1 85 years, male 2835.2
415_1 77 years, female 2790.7
286_1 68 years, female 2756.7
149_1 88 years, male 2725.8
265_1 87 years, male 2712.3
499_1 55 years, female 2679.5
9_1 66 years, female 2635.7
292_1 71 years, male 2619.8
466_1 57 years, female 2597.6
335_1 73 years, female 2461.3
229_1 69 years, female 2412.6
217_1 76 years, male 2411.3
425_1 59 years, female 2347.9
517_1 88 years, male 2326.2
413_1 59 years, female 2193.5
246_1 77 years, male 2155.9
352_1 62 years, male 2018.5
468_1 89 years, male 1988.6
32_1 67 years, male 1491.4
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 3532.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 3532.4
FF:10030-101E3 24-65 years, mixed 3532.4

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 10.0
Pig sample Sample description nTPM
Retina
nTPM: 10.1
Samples: 4

Max nTPM: 12.6
Min nTPM: 6.3
Sample A Female 6.3
Sample B Female 11.1
Sample C Male 12.6
Sample D Male 10.2

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 22.7
Mouse sample Sample description nTPM
Retina
nTPM: 22.8
Samples: 4

Max nTPM: 42.7
Min nTPM: 9.0
Sample A Male 22.1
Sample B Male 42.7
Sample C Female 17.3
Sample D Female 9.0

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by the Knut & Alice Wallenberg Foundation.