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SLC48A1
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  • SLC48A1
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:103.2 nTPM
HPA:103.2 nTPM
GTEx:134.1 nTPM
FANTOM5:172.3 Scaled Tags Per Million
Pig:69.2 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 103.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 93.5
1981 Female, age 72, midline 94.7
2194 Female, age 79, both hemispheres 94.7
2816 Male, age 47, midline 93.8
2565 Male, age 75, midline 92.4
2048 Male, age 55, midline 91.7
Cervical spinal cord, dorsal horn
nTPM: 94.5
2296 Male, age 66, both hemispheres 108.5
2173 Female, age 72, unknown 108.1
1877 Male, age 55, unknown 92.9
2069 Male, age 47, both hemispheres 91.2
2721 Male, age 90, both hemispheres 84.1
2297 Male, age 75, both hemispheres 82.1
Cervical spinal cord, ventral horn
nTPM: 103.2
2820 Female, age 79, both hemispheres 109.7
2068 Male, age 55, unknown 108.6
2480 Male, age 75, both hemispheres 103.7
2295 Male, age 66, both hemispheres 100.9
2809 Male, age 90, both hemispheres 98.1
2098 Female, age 72, unknown 97.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 134.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 134.1
Samples: 159

Max nTPM: 260.8
Min nTPM: 46.7
Std nTPM: 44.6
Median nTPM: 131.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 260.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 255.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 245.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 228.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 224.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 213.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 209.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 208.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 206.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 204.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 201.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 199.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 198.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 197.9
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 197.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 195.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 195.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 193.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 193.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 190.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 189.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 188.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 186.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 186.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 185.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 184.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 183.2
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 180.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 180.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 179.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 176.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 173.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 173.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 171.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 170.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 169.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 168.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 167.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 167.5
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 166.5
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 165.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 163.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 161.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 161.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 160.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 158.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 156.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 156.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 154.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 154.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 153.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 152.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 150.4
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 150.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 149.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 148.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 147.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 147.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 145.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 144.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 142.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 142.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 141.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 141.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 140.1
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 140.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 139.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 139.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 138.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 137.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 136.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 135.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 135.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 134.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 134.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 133.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 132.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 131.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 131.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 131.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 130.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 130.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 129.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 127.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 127.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 126.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 126.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 124.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 124.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 123.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 122.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 120.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 120.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 119.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 119.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 119.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 119.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 117.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 117.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 116.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 115.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 115.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 114.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 114.2
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 113.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 111.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 110.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 109.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 109.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 108.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 108.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 106.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 106.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 105.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 104.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 104.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 102.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 102.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 101.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 101.1
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 100.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 99.4
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 97.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 97.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 96.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 96.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 96.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 96.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 95.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 94.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 93.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 93.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 93.5
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 92.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 90.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 89.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 88.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 87.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 84.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 81.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 80.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 78.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 76.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 75.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 71.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 70.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 70.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 69.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 65.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 65.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 65.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 61.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 60.7
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 60.4
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 60.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 58.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 51.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 50.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 46.7
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 172.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 172.3
FF:10181-103D1 60 years, female 208.7
FF:10159-103A6 76 years, female 135.9

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 69.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 54.1
Samples: 4

Max nTPM: 62.0
Min nTPM: 41.3
Sample A Female 62.0
Sample B Female 53.7
Sample C Male 41.3
Sample D Male 59.2
Ventral spinal cord
nTPM: 69.2
Samples: 4

Max nTPM: 74.2
Min nTPM: 65.0
Sample A Female 74.2
Sample B Female 70.8
Sample C Male 65.0
Sample D Male 66.7

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