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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glandular cells: Not detected
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:2373.2 nTPM
HPA:2373.2 nTPM
GTEx:1179.6 nTPM

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody CAB000050Antibody CAB016533
Glandular cells HighNot detected




SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 2373.2
overview
Male, age 65
Small intestine sample 232
nTPM: 5438.8
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 1446.4
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 825.5
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 1782.4

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1179.6
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 1179.6
Samples: 187

Max nTPM: 17773.4
Min nTPM: 1.5
Std nTPM: 1552.7
Median nTPM: 941.5
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 17773.4
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 5178.6
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 4523.2
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 4450.8
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 4282.4
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 4128.2
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 4043.2
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 3968.6
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 3460.8
GTEX-13113-1226-SM-5EGHT 60-69 years, female 3360.2
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 2906.6
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 2774.0
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 2749.5
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 2595.9
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 2415.3
GTEX-14PK6-1626-SM-6871I 70-79 years, female 2267.6
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 2210.2
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 2166.8
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 2054.4
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 2038.5
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 2032.1
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 2021.2
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 2003.3
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 2001.1
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 1975.4
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 1951.2
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 1935.5
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 1931.9
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 1910.7
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 1871.4
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 1839.4
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 1835.8
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 1831.9
GTEX-13111-1426-SM-5DUW3 50-59 years, male 1794.5
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 1788.1
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 1783.9
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 1774.9
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 1654.1
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 1650.5
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 1637.9
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 1632.8
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 1624.1
GTEX-YFCO-1326-SM-664NV 40-49 years, male 1617.5
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 1597.5
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 1596.8
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 1587.4
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 1564.9
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 1543.0
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 1519.9
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 1459.0
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 1453.4
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 1448.2
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 1409.5
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 1392.0
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 1361.7
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 1352.4
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 1348.1
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 1325.9
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 1309.7
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 1296.3
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 1295.3
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 1278.0
GTEX-14PKU-1626-SM-6871C 40-49 years, female 1273.6
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 1261.0
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 1255.9
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 1209.5
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 1147.4
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 1147.0
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 1138.5
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 1120.1
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 1112.3
GTEX-111YS-1426-SM-5GID8 60-69 years, male 1090.1
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 1088.8
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 1085.0
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 1082.0
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 1068.5
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 1067.9
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 1066.8
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 1058.7
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 1056.3
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 1054.8
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 1052.8
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 1049.6
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 1048.3
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 1017.5
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 1016.5
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 1014.8
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 1011.7
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 976.5
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 972.9
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 970.9
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 959.0
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 943.5
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 941.5
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 933.4
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 927.0
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 914.8
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 905.8
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 904.4
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 887.1
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 885.6
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 870.4
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 870.0
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 866.5
GTEX-183FY-1626-SM-793D8 20-29 years, male 861.4
GTEX-14PN3-2026-SM-68729 60-69 years, female 837.0
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 829.9
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 829.2
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 793.3
GTEX-1C475-1426-SM-793CH 40-49 years, female 777.1
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 768.9
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 759.7
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 729.8
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 712.8
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 708.5
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 687.9
GTEX-144GM-1026-SM-79OKU 20-29 years, male 675.3
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 666.6
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 656.1
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 654.2
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 624.2
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 618.3
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 600.1
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 571.1
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 568.0
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 559.9
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 537.4
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 535.8
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 525.2
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 523.7
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 523.5
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 514.9
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 512.9
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 485.4
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 473.0
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 471.1
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 460.9
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 455.6
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 447.9
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 433.4
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 423.8
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 422.9
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 414.6
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 357.0
GTEX-1122O-1326-SM-5H11F 60-69 years, female 352.9
GTEX-13O61-1326-SM-5KM31 60-69 years, male 350.4
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 348.5
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 337.5
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 317.1
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 309.3
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 280.3
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 275.5
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 271.5
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 225.4
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 185.8
GTEX-ZTSS-0926-SM-59865 40-49 years, male 176.1
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 173.3
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 162.5
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 154.3
GTEX-1192X-2526-SM-59868 50-59 years, male 150.6
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 72.4
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 67.6
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 67.3
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 45.4
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 40.3
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 34.6
GTEX-117YX-0326-SM-5GICL 50-59 years, male 34.0
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 22.3
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 21.8
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 20.7
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 19.8
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 19.3
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 18.6
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 16.5
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 15.5
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 14.2
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 13.0
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 12.2
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 10.6
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 8.1
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 5.0
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 4.7
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 4.7
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 3.0
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 2.7
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 1.7
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 1.5
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The Human Protein Atlas project is funded
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