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BRAIN PONS AND MEDULLA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
PONS AND MEDULLA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:92948.1 nTPM
HPA:92948.1 nTPM
Pig:25476.2 nTPM
Mouse:17036.8 nTPM

PONS AND MEDULLA - Annotated protein expression
Pending normal tissue analysis

PONS AND MEDULLA - HPA Brain RNA-seq
Max nTPM 92948.1
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 84143.0
2301 Female, age 85, both hemispheres 89900.1
2188 Female, age 91, both hemispheres 85415.4
1984 Male, age 76, both hemispheres 81823.5
2090 Male, age 80, both hemispheres 79433.2
Area postrema
nTPM: 88522.4
2799 Male, age 61, both hemispheres 91069.9
2306 Male, age 80, both hemispheres 90249.0
2054 Male, age 76, both hemispheres 84248.3
Cuneate nuclei
nTPM: 90172.4
2381 Male, age 80, both hemispheres 96414.2
2131 Male, age 76, both hemispheres 90098.2
2376 Male, age 61, both hemispheres 84004.9
Dorsal cochlear nucleus
nTPM: 85804.6
2378 Male, age 80, both hemispheres 95949.5
2802 Male, age 74, right hemisphere 84246.0
2187 Female, age 91, both hemispheres 83636.5
2370 Male, age 61, both hemispheres 83052.9
2058 Male, age 76, both hemispheres 82138.1
Dorsal medullary reticular nucleus
nTPM: 82693.9
2373 Male, age 61, both hemispheres 84680.3
2088 Male, age 76, both hemispheres 84600.3
2040 Female, age 85, both hemispheres 78801.1
Dorsal motor vagal complex
nTPM: 89023.7
2807 Female, age 85, both hemispheres 99694.0
2797 Male, age 61, both hemispheres 99485.2
2185 Male, age 76, both hemispheres 92514.3
2643 Male, age 74, both hemispheres 92052.7
2813 Female, age 72, unknown 90218.4
2133 Female, age 91, both hemispheres 80060.7
2000 Male, age 74, unknown 79135.7
2844 Male, age 55, unknown 79028.5
Dorsal tegmental nucleus
nTPM: 83991.6
2358 Male, age 61, both hemispheres 93827.4
1936 Male, age 76, left hemisphere 82258.5
2083 Male, age 80, both hemispheres 81424.2
2326 Male, age 74, both hemispheres 78456.2
Dorsolateral tegmental area
nTPM: 80494.3
2141 Male, age 76, both hemispheres 84598.8
2654 Male, age 80, both hemispheres 81639.4
2337 Male, age 61, both hemispheres 81289.5
2751 Female, age 85, both hemispheres 77937.3
2360 Male, age 74, both hemispheres 77006.2
Gigantocellular reticular nuclei, medullary
nTPM: 84075.1
2387 Female, age 91, both hemispheres 93286.8
2310 Male, age 80, both hemispheres 86263.1
2314 Male, age 61, both hemispheres 85865.1
2022 Male, age 76, right hemisphere 80744.6
2462 Male, age 74, both hemispheres 80225.7
1876 Female, age 85, both hemispheres 78065.3
Gigantocellular reticular nuclei, pars
nTPM: 90939.3
2706 Male, age 80, both hemispheres 104188.1
2330 Male, age 80, both hemispheres 102074.5
2336 Male, age 61, both hemispheres 85018.9
2168 Male, age 76, both hemispheres 81923.4
2084 Female, age 85, both hemispheres 81491.4
Inferior olive
nTPM: 89167.7
2628 Female, age 91, both hemispheres 108823.8
2379 Male, age 80, both hemispheres 93825.3
2178 Male, age 61, both hemispheres 82847.3
2085 Female, age 85, both hemispheres 81846.4
2563 Male, age 74, both hemispheres 78495.7
Kolliker-Fuse nucleus
nTPM: 86236.1
2793 Female, age 91, left hemisphere 98528.1
2163 Male, age 80, both hemispheres 84148.5
2315 Male, age 76, right hemisphere 76031.7
Lateral lemniscal nuclei
nTPM: 82757.5
2453 Male, age 74, right hemisphere 87597.4
2320 Female, age 91, left hemisphere 86217.3
2169 Male, age 76, both hemispheres 85050.7
2036 Male, age 80, both hemispheres 78949.2
2746 Female, age 85, left hemisphere 75973.1
Lateral medullary reticular nucleus
nTPM: 82739.5
2374 Male, age 61, both hemispheres 93089.3
2804 Female, age 91, both hemispheres 86663.6
2190 Female, age 85, both hemispheres 84465.9
2044 Male, age 76, both hemispheres 80795.2
2852 Male, age 80, both hemispheres 76198.0
2305 Male, age 74, both hemispheres 75224.9
Lateral parabrachial nucleus
nTPM: 79714.8
2792 Male, age 76, both hemispheres 82570.5
2790 Male, age 61, both hemispheres 81579.9
2139 Female, age 85, right hemisphere 77841.9
2013 Male, age 80, both hemispheres 76866.9
Lateral vestibular nucleus
nTPM: 89012.2
2184 Male, age 76, both hemispheres 93265.5
2311 Male, age 80, both hemispheres 84758.9
Locus coeruleus
nTPM: 83608.9
2720 Male, age 74, both hemispheres 99900.7
2162 Male, age 80, both hemispheres 85908.5
2788 Male, age 74, unknown 83923.1
1980 Male, age 76, both hemispheres 79971.7
2014 Male, age 55, unknown 79189.9
2317 Female, age 72, unknown 79055.0
2123 Female, age 91, both hemispheres 77313.2
Medial olivary nucleus
nTPM: 80940.3
2851 Male, age 80, both hemispheres 93900.4
2138 Female, age 91, both hemispheres 77772.9
1962 Male, age 76, both hemispheres 76869.9
1943 Male, age 61, both hemispheres 75218.2
Medial parabrachial nucleus
nTPM: 82862.3
2854 Male, age 80, both hemispheres 92801.2
2786 Male, age 76, both hemispheres 84815.1
2156 Male, age 61, both hemispheres 82687.5
2170 Female, age 91, both hemispheres 79425.0
2463 Female, age 85, right hemisphere 74582.5
Medial periolivary nuclei
nTPM: 82005.2
2458 Female, age 91, both hemispheres 92533.3
2171 Female, age 85, both hemispheres 84128.1
2063 Male, age 76, both hemispheres 78637.2
2081 Male, age 80, both hemispheres 78286.1
2791 Male, age 74, right hemisphere 76441.1
Medial vestibular nucleus
nTPM: 86012.0
2624 Male, age 61, both hemispheres 101082.5
2803 Female, age 91, both hemispheres 87158.0
2801 Male, age 74, both hemispheres 84653.6
2134 Male, age 76, both hemispheres 83684.2
2093 Male, age 80, both hemispheres 81339.7
2743 Female, age 85, both hemispheres 78154.1
Motor facial nucleus
nTPM: 88928.8
2697 Female, age 85, both hemispheres 106513.6
2795 Female, age 91, both hemispheres 100357.7
2327 Male, age 80, both hemispheres 90757.5
2365 Male, age 74, right hemisphere 79882.0
2062 Male, age 76, both hemispheres 78318.2
2126 Male, age 61, both hemispheres 77743.6
Motor hypoglossal nucleus
nTPM: 85637.7
2461 Male, age 61, both hemispheres 102804.0
2182 Male, age 80, both hemispheres 85358.3
2132 Female, age 85, both hemispheres 84685.6
2125 Female, age 91, both hemispheres 78757.6
2277 Male, age 76, both hemispheres 76583.1
Motor trigeminal nucleus
nTPM: 82716.8
2321 Female, age 91, both hemispheres 87897.9
2309 Male, age 76, both hemispheres 82134.7
2560 Male, age 74, both hemispheres 81926.6
2335 Male, age 61, both hemispheres 81696.4
2079 Male, age 80, both hemispheres 79928.1
Nuclei of the trapezoid body
nTPM: 82816.5
2368 Female, age 91, both hemispheres 91396.2
2166 Male, age 80, both hemispheres 85405.5
1983 Male, age 76, both hemispheres 80094.1
2159 Male, age 61, both hemispheres 78897.7
2735 Female, age 85, both hemispheres 78289.1
Nucleus ambiguus
nTPM: 75255.7
2071 Male, age 76, both hemispheres 75703.4
2096 Female, age 85, both hemispheres 74808.1
Nucleus cuneatus
nTPM: 92948.1
2805 Female, age 91, both hemispheres 111770.0
2808 Female, age 85, both hemispheres 95107.8
2380 Male, age 80, both hemispheres 92786.4
2562 Male, age 61, both hemispheres 88830.2
2100 Male, age 76, both hemispheres 87118.3
2564 Male, age 74, both hemispheres 82075.9
Nucleus gracilis
nTPM: 90842.1
2382 Male, age 80, both hemispheres 96750.7
2299 Female, age 85, both hemispheres 91391.9
2627 Male, age 74, both hemispheres 84383.8
Nucleus raphe magnus
nTPM: 84886.9
2459 Female, age 91, both hemispheres 89976.4
2172 Female, age 85, both hemispheres 89278.7
2328 Male, age 80, both hemispheres 87746.0
2051 Male, age 76, both hemispheres 81948.3
2455 Male, age 74, both hemispheres 81415.7
2160 Male, age 61, both hemispheres 78956.5
Nucleus raphe obscurus
nTPM: 78972.8
2845 Female, age 85, midline 81304.5
2800 Male, age 61, midline 80056.1
2142 Male, age 76, midline 75557.9
Nucleus raphe pallidus
nTPM: 77244.8
2183 Male, age 80, midline 81140.4
2145 Male, age 76, midline 75699.6
1924 Male, age 61, midline 74894.5
Nucleus tractus solitarii
nTPM: 83446.9
2191 Female, age 85, both hemispheres 89401.4
2307 Male, age 80, both hemispheres 85591.8
2656 Male, age 76, both hemispheres 81834.4
2144 Female, age 91, right hemisphere 76959.8
Paramedian reticular nucleus
nTPM: 80801.9
2052 Male, age 76, both hemispheres 82748.0
2313 Male, age 61, both hemispheres 82250.4
2050 Female, age 85, both hemispheres 80714.1
2057 Male, age 80, both hemispheres 77495.0
Parvicellular reticular nuclei
nTPM: 81391.9
2558 Male, age 74, both hemispheres 83340.3
2095 Male, age 76, both hemispheres 82506.2
2119 Male, age 80, both hemispheres 78329.1
Parvicellular reticular nuclei, medullary
nTPM: 83921.8
2181 Male, age 80, left hemisphere 87202.5
2189 Female, age 91, both hemispheres 82665.7
2091 Female, age 85, both hemispheres 81897.1
Peritrigeminal nucleus
nTPM: 78865.7
2136 Male, age 76, both hemispheres 81514.0
2179 Male, age 61, both hemispheres 78673.2
2067 Female, age 85, both hemispheres 76410.0
Pontine nuclei
nTPM: 79088.7
2787 Female, age 85, both hemispheres 83320.0
2319 Female, age 91, both hemispheres 82955.1
2115 Male, age 80, left hemisphere 79571.5
2454 Male, age 74, left hemisphere 79210.7
1863 Male, age 55, unknown 78458.8
1968 Male, age 76, left hemisphere 77949.9
2109 Female, age 72, unknown 75931.2
2727 Male, age 61, right hemisphere 75312.3
Pontine raphe nucleus
nTPM: 81078.3
2853 Male, age 76, midline 82674.1
2122 Female, age 85, midline 79482.5
Posteroventral cochlear nucleus
nTPM: 81006.4
2341 Male, age 80, both hemispheres 85664.2
2371 Male, age 61, both hemispheres 84713.3
2752 Female, age 85, both hemispheres 79060.3
2135 Female, age 91, both hemispheres 78267.2
2070 Male, age 76, both hemispheres 77326.8
Prepositus hypoglossal nucleus
nTPM: 82842.6
2855 Female, age 85, right hemisphere 85408.5
2086 Male, age 80, both hemispheres 80276.7
Principal sensory trigeminal nucleus
nTPM: 85403.1
2324 Male, age 76, both hemispheres 93392.2
2367 Female, age 91, left hemisphere 91204.4
2158 Male, age 61, both hemispheres 78904.0
2008 Male, age 80, left hemisphere 78112.0
Reticular pontine nucleus, caudal
nTPM: 85288.0
2457 Female, age 91, both hemispheres 91122.7
2332 Male, age 80, right hemisphere 90467.2
2559 Male, age 74, both hemispheres 80290.3
2092 Male, age 76, both hemispheres 79271.8
Reticular pontine nucleus, oral
nTPM: 84326.7
2366 Female, age 91, both hemispheres 100676.2
2167 Male, age 76, both hemispheres 86865.5
1939 Male, age 80, both hemispheres 79131.0
2361 Male, age 74, both hemispheres 77498.6
2012 Female, age 85, both hemispheres 77462.3
Reticulotegmental nucleus
nTPM: 88173.3
2322 Female, age 91, both hemispheres 91868.3
2333 Male, age 80, both hemispheres 89058.2
2325 Male, age 76, both hemispheres 87788.4
2452 Male, age 74, both hemispheres 83978.1
Spinal trigeminal nucleus, caudal
nTPM: 86229.6
2390 Female, age 91, both hemispheres 94335.2
2308 Male, age 80, both hemispheres 85895.8
2447 Male, age 76, both hemispheres 85087.3
2642 Male, age 74, both hemispheres 84969.6
2312 Male, age 61, both hemispheres 80860.0
Spinal trigeminal nucleus, interpolar
nTPM: 85054.9
2625 Male, age 61, both hemispheres 95035.6
2389 Female, age 91, both hemispheres 92225.7
2386 Female, age 85, both hemispheres 79810.7
2066 Male, age 76, right hemisphere 79264.7
2033 Male, age 80, both hemispheres 78937.5
Spinal trigeminal nucleus, oral
nTPM: 85182.2
2164 Male, age 80, both hemispheres 95119.3
1978 Male, age 76, both hemispheres 81984.5
2737 Female, age 85, both hemispheres 78442.7
Spinal vestibular nucleus
nTPM: 83741.2
2796 Male, age 61, both hemispheres 92775.3
2806 Female, age 85, both hemispheres 86985.0
2186 Female, age 91, both hemispheres 82822.7
2384 Male, age 74, both hemispheres 81290.6
2748 Male, age 76, both hemispheres 79362.3
2780 Male, age 80, both hemispheres 79211.1
Subcoeruleus area
nTPM: 80539.6
1958 Male, age 80, both hemispheres 82200.6
2451 Male, age 74, both hemispheres 81783.9
2323 Female, age 91, left hemisphere 80961.1
2089 Male, age 76, left hemisphere 79796.4
2369 Female, age 85, left hemisphere 77955.9
Superior olive
nTPM: 83174.7
2561 Female, age 91, both hemispheres 94571.6
2329 Male, age 80, right hemisphere 88553.3
2020 Male, age 76, both hemispheres 78567.7
1875 Female, age 85, both hemispheres 77522.4
2364 Male, age 74, right hemisphere 76658.7
Superior vestibular nucleus
nTPM: 78791.0
2061 Male, age 76, both hemispheres 79544.4
2015 Male, age 80, both hemispheres 78489.0
2383 Male, age 74, both hemispheres 78339.7
Ventral medullary reticular nucleus
nTPM: 83195.2
2372 Male, age 61, both hemispheres 85935.0
2060 Male, age 76, both hemispheres 80455.4
Ventral periolivary nuclei
nTPM: 83110.4
2794 Female, age 91, left hemisphere 90355.6
2165 Male, age 80, both hemispheres 86804.4
2130 Female, age 85, both hemispheres 78939.3
2023 Male, age 76, both hemispheres 76342.2
Ventrolateral medulla, A1-C1 cell groups
nTPM: 80745.0
2302 Female, age 91, both hemispheres 83613.9
2180 Male, age 61, both hemispheres 83317.6
2118 Male, age 80, both hemispheres 79408.1
1986 Male, age 76, both hemispheres 79314.3
2741 Female, age 85, both hemispheres 78071.0
Ventrolateral tegmental area, A5 NE cell group
nTPM: 87649.0
2840 Female, age 85, both hemispheres 96952.2
2456 Female, age 91, both hemispheres 91388.5
2359 Male, age 61, both hemispheres 87891.4
2161 Male, age 80, both hemispheres 85466.0
1959 Male, age 76, both hemispheres 82620.9
2449 Male, age 74, both hemispheres 81574.8

PONS AND MEDULLA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 25476.2
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 20013.5
Samples: 4

Max nTPM: 23448.0
Min nTPM: 16556.3
Sample A Female 23448.0
Sample B Female 21987.3
Sample C Male 18062.3
Sample D Male 16556.3
Pons
nTPM: 25476.2
Samples: 4

Max nTPM: 32218.6
Min nTPM: 20077.7
Sample A Female 28170.7
Sample B Female 20077.7
Sample C Male 21437.9
Sample D Male 32218.6

PONS AND MEDULLA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 17036.8
Mouse sample Sample description nTPM
Pons and medulla
nTPM: 17036.8
Samples: 4

Max nTPM: 17437.7
Min nTPM: 16697.3
Sample A Male 17145.5
Sample B Male 16697.3
Sample C Female 16866.5
Sample D Female 17437.7

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