BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:48.6 nTPM
HPA:48.6 nTPM
GTEx:54.1 nTPM
FANTOM5:69.6 Scaled Tags Per Million
Pig:16.1 nTPM
Mouse:120.7 nTPM
Allen mouse:0.8 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 48.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 48.6
2481 Female, age 94, left hemisphere 52.4
2288 Male, age 75, left hemisphere 52.1
2846 Female, age 79, unknown 49.1
1857 Female, age 85, left hemisphere 48.9
2290 Female, age 72, unknown 48.4
1781 Male, age 74, unknown 46.5
2289 Male, age 61, right hemisphere 46.0
1854 Male, age 80, left hemisphere 45.3
Claustrum
nTPM: 43.8
2198 Male, age 80, both hemispheres 46.2
2196 Female, age 79, unknown 46.1
1956 Male, age 74, unknown 45.6
2491 Male, age 75, both hemispheres 45.6
2284 Female, age 91, both hemispheres 44.3
2392 Female, age 94, both hemispheres 42.1
2568 Male, age 61, both hemispheres 42.0
2292 Female, age 85, both hemispheres 41.5
2645 Female, age 72, unknown 40.7
Globus pallidus, externus
nTPM: 43.4
2772 Female, age 79, unknown 47.9
1996 Male, age 80, right hemisphere 45.6
2395 Male, age 75, both hemispheres 43.6
2646 Male, age 61, right hemisphere 41.4
2567 Female, age 72, unknown 38.5
Globus pallidus, internus
nTPM: 44.6
2287 Male, age 75, right hemisphere 49.1
2483 Female, age 94, right hemisphere 47.4
1818 Male, age 74, unknown 45.8
2778 Female, age 91, both hemispheres 44.8
2037 Male, age 80, right hemisphere 44.0
2111 Female, age 85, right hemisphere 41.4
2566 Female, age 72, unknown 40.1
Nucleus accumbens
nTPM: 46.6
2286 Male, age 75, left hemisphere 50.4
1783 Male, age 74, unknown 47.8
2391 Female, age 94, left hemisphere 46.8
1856 Female, age 91, right hemisphere 46.7
1806 Female, age 85, left hemisphere 46.6
2698 Female, age 72, unknown 46.2
2824 Male, age 61, right hemisphere 45.3
2732 Male, age 80, right hemisphere 43.1
Nucleus basalis of Meynert
nTPM: 44.8
2484 Female, age 94, left hemisphere 46.2
2821 Male, age 75, both hemispheres 46.0
2393 Male, age 80, right hemisphere 44.2
2569 Male, age 61, both hemispheres 42.9
Nucleus of the diagonal band
nTPM: 47.4
1812 Female, age 91, both hemispheres 49.4
2775 Male, age 80, right hemisphere 48.7
2195 Female, age 85, both hemispheres 48.1
2029 Male, age 61, right hemisphere 45.8
1979 Male, age 74, unknown 44.9
Olfactory tubercle
nTPM: 46.1
1846 Male, age 80, right hemisphere 48.7
1998 Female, age 91, both hemispheres 47.8
2856 Male, age 75, right hemisphere 45.1
2487 Female, age 94, left hemisphere 43.0
Putamen
nTPM: 46.9
2482 Female, age 94, left hemisphere 51.9
2466 Female, age 79, unknown 49.1
2489 Female, age 72, unknown 46.0
1937 Female, age 91, right hemisphere 45.7
1838 Male, age 80, right hemisphere 45.6
1829 Male, age 74, unknown 44.9
2647 Male, age 75, left hemisphere 44.9
Septal nuclei
nTPM: 45.4
1960 Male, age 74, unknown 49.9
2629 Female, age 94, right hemisphere 48.5
2031 Female, age 72, unknown 46.6
2009 Female, age 91, both hemispheres 45.2
2199 Male, age 80, right hemisphere 44.6
2059 Female, age 85, both hemispheres 43.8
2394 Male, age 61, left hemisphere 39.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 54.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 51.5
Samples: 246

Max nTPM: 105.8
Min nTPM: 32.7
Std nTPM: 10.4
Median nTPM: 49.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 105.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 92.7
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 92.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 85.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 84.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 80.5
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 78.1
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 77.0
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 76.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 75.6
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 75.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 52.3
Samples: 246

Max nTPM: 82.6
Min nTPM: 32.6
Std nTPM: 9.3
Median nTPM: 52.0
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 82.6
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 81.7
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 80.0
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 78.6
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 75.6
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 75.0
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 74.4
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 73.3
GTEX-13O3Q-0011-R6a-SM-5KM2V 50-59 years, male 72.5
GTEX-139TT-0011-R6b-SM-5J2ON 60-69 years, male 71.4
GTEX-12WSC-0011-R6b-SM-5LU99 50-59 years, male 70.3
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Brain - Putamen (basal ganglia)
Average nTPM: 54.1
Samples: 205

Max nTPM: 83.4
Min nTPM: 34.6
Std nTPM: 9.6
Median nTPM: 53.2
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 83.4
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 82.4
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 80.6
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 80.5
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 80.3
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 75.1
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 74.6
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 72.9
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 72.2
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 72.0
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 71.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 69.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 54.3
FF:10164-103B2 76 years, female 54.3
Globus pallidus
Scaled Tags Per Million: 48.9
FF:10175-103C4 60 years, female 54.4
FF:10161-103A8 76 years, female 43.3
Nucleus accumbens
Scaled Tags Per Million: 69.6
FF:10037-101F1 23-56 years, mixed 69.6
Putamen
Scaled Tags Per Million: 60.5
FF:10176-103C5 60 years, female 60.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 16.1
Pig sample Sample description nTPM
Caudate
nTPM: 15.3
Samples: 4

Max nTPM: 17.5
Min nTPM: 13.4
Sample A Female 14.3
Sample B Female 17.5
Sample C Male 15.9
Sample D Male 13.4
Putamen
nTPM: 13.7
Samples: 4

Max nTPM: 15.1
Min nTPM: 12.6
Sample A Female 12.6
Sample B Female 13.1
Sample C Male 14.0
Sample D Male 15.1
Septum
nTPM: 16.1
Samples: 4

Max nTPM: 18.4
Min nTPM: 13.7
Sample A Female 18.4
Sample B Female 17.1
Sample C Male 15.2
Sample D Male 13.7
Ventral pallidum
nTPM: 15.3
Samples: 4

Max nTPM: 16.5
Min nTPM: 13.7
Sample A Female 15.4
Sample B Female 15.4
Sample C Male 13.7
Sample D Male 16.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 120.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 120.7
Samples: 4

Max nTPM: 130.3
Min nTPM: 111.7
Sample A Male 111.7
Sample B Male 117.3
Sample C Female 130.3
Sample D Female 123.5
Septum
nTPM: 109.9
Samples: 4

Max nTPM: 119.9
Min nTPM: 98.6
Sample A Male 98.6
Sample B Male 113.8
Sample C Female 119.9
Sample D Female 107.2
Ventral forebrain
nTPM: 116.9
Samples: 4

Max nTPM: 131.7
Min nTPM: 106.1
Sample A Male 113.4
Sample B Male 106.1
Sample C Female 131.7
Sample D Female 116.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.8
69117044 Antisense, RP_050321_01_F06, Mouse strain C57BL/6J (56 days, male) 0.8
Pallidum
Expression energy: 0.8
69117044 Antisense, RP_050321_01_F06, Mouse strain C57BL/6J (56 days, male) 0.8

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The Human Protein Atlas

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