MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:49.3 nTPM
HPA:49.3 nTPM
GTEx:122.1 nTPM
FANTOM5:57.8 Scaled Tags Per Million
Pig:100.6 nTPM
Mouse:181.3 nTPM
Allen mouse:11.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 49.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 46.5
2019 Male, age 18, unknown 54.6
2411 Female, age 72, unknown 48.3
2828 Female, age 72, unknown 47.8
1827 Male, age 72, unknown 47.7
2586 Male, age 75, left hemisphere 46.4
1870 Female, age 42, unknown 44.8
1833 Male, age 53, unknown 44.4
2219 Male, age 76, both hemispheres 44.4
2666 Male, age 74, left hemisphere 43.5
1830 Male, age 51, unknown 43.0
Dorsal raphe nucleus
nTPM: 48.1
2298 Female, age 72, unknown 53.6
1828 Male, age 53, unknown 50.0
2047 Male, age 72, unknown 46.8
2016 Female, age 72, unknown 45.3
2750 Male, age 76, both hemispheres 44.7
Inferior colliculus
nTPM: 48.0
2097 Female, age 72, unknown 53.0
1890 Male, age 53, unknown 49.0
1848 Female, age 42, unknown 46.8
2849 Male, age 72, unknown 43.1
Median raphe nucleus
nTPM: 43.2
2220 Male, age 76, midline 43.2
Pedunculopontine tegmental nucleus
nTPM: 46.0
1921 Female, age 85, both hemispheres 48.4
2334 Male, age 80, both hemispheres 45.7
2338 Male, age 61, both hemispheres 43.9
Periaquaductal grey, anterior
nTPM: 46.8
1795 Male, age 51, unknown 48.2
2502 Female, age 75, unknown 47.0
1947 Male, age 18, unknown 45.3
Periaquaductal grey, dorsal
nTPM: 44.0
2464 Female, age 72, unknown 44.9
1840 Male, age 53, unknown 44.8
1831 Male, age 72, unknown 43.3
2850 Male, age 76, both hemispheres 42.8
Periaquaductal grey, lateral
nTPM: 45.3
2272 Male, age 74, both hemispheres 49.4
2140 Male, age 76, both hemispheres 43.8
2053 Male, age 18, unknown 42.8
Pretectal area
nTPM: 49.3
1817 Female, age 42, unknown 56.3
2007 Male, age 72, unknown 55.0
1816 Male, age 51, unknown 53.2
2273 Male, age 74, both hemispheres 51.1
1815 Male, age 53, unknown 50.3
1944 Female, age 72, unknown 50.2
2667 Female, age 75, unknown 49.3
2224 Female, age 72, unknown 46.3
2316 Male, age 76, right hemisphere 44.5
2825 Male, age 18, unknown 43.3
2407 Male, age 75, both hemispheres 42.8
Red nucleus
nTPM: 48.2
2725 Female, age 75, unknown 52.0
1821 Female, age 72, unknown 51.9
2785 Male, age 18, unknown 51.9
2503 Female, age 72, unknown 51.4
2769 Male, age 72, unknown 48.6
2227 Male, age 72, unknown 47.9
2823 Male, age 76, right hemisphere 47.8
1954 Female, age 42, unknown 47.5
1865 Male, age 51, unknown 46.7
2588 Male, age 74, left hemisphere 46.1
1904 Male, age 53, unknown 45.7
2584 Male, age 75, left hemisphere 40.4
Substantia nigra
nTPM: 47.6
1916 Female, age 42, unknown 51.1
1889 Female, age 72, unknown 50.9
1851 Male, age 51, unknown 49.4
2241 Male, age 72, unknown 49.4
2409 Female, age 72, unknown 47.7
2665 Male, age 74, both hemispheres 47.4
1941 Male, age 53, unknown 47.1
2699 Male, age 18, unknown 45.1
2583 Male, age 75, right hemisphere 43.9
2590 Female, age 75, unknown 43.7
Superior colliculus
nTPM: 46.6
2087 Female, age 72, unknown 50.5
1796 Male, age 53, unknown 49.1
2261 Male, age 18, unknown 48.5
2587 Male, age 74, left hemisphere 48.4
1895 Male, age 76, right hemisphere 47.4
2668 Female, age 75, unknown 46.3
1839 Male, age 51, unknown 44.6
1995 Male, age 72, unknown 44.4
1913 Female, age 42, unknown 44.1
2664 Male, age 75, both hemispheres 42.8
Ventral tegmental area
nTPM: 46.7
2410 Female, age 72, unknown 51.3
1915 Female, age 42, unknown 48.5
1942 Male, age 51, unknown 46.6
2218 Male, age 76, both hemispheres 45.9
2223 Female, age 72, unknown 44.6
2021 Male, age 53, unknown 43.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 122.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 122.1
Samples: 139

Max nTPM: 201.8
Min nTPM: 48.5
Std nTPM: 32.5
Median nTPM: 117.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 201.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 193.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 193.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 193.0
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 189.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 188.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 185.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 180.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 178.1
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 175.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 174.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 57.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 57.8
FF:10158-103A5 76 years, female 57.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 100.6
Pig sample Sample description nTPM
Midbrain
nTPM: 82.6
Samples: 4

Max nTPM: 95.3
Min nTPM: 73.3
Sample A Female 80.9
Sample B Female 73.3
Sample C Male 95.3
Sample D Male 80.7
Periaqueductal gray
nTPM: 63.8
Samples: 3

Max nTPM: 71.0
Min nTPM: 56.5
Sample B Female 63.9
Sample C Male 71.0
Sample D Male 56.5
Substantia nigra
nTPM: 74.7
Samples: 4

Max nTPM: 104.6
Min nTPM: 57.9
Sample A Female 104.6
Sample B Female 57.9
Sample C Male 72.4
Sample D Male 64.0
Superior colliculi
nTPM: 100.6
Samples: 4

Max nTPM: 124.9
Min nTPM: 74.5
Sample A Female 122.3
Sample B Female 74.5
Sample C Male 124.9
Sample D Male 80.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 181.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 181.4
Samples: 4

Max nTPM: 192.6
Min nTPM: 167.7
Sample A Male 190.7
Sample B Male 174.4
Sample C Female 167.7
Sample D Female 192.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 11.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 11.7
67767465 Antisense, RP_040916_02_B04, Mouse strain C57BL/6J (56 days, male) 11.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.