MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:78.6 nTPM
HPA:78.6 nTPM
GTEx:63.3 nTPM
FANTOM5:32.3 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 78.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 77.7
2586 Male, age 75, left hemisphere 88.2
2828 Female, age 72, unknown 82.8
1827 Male, age 72, unknown 79.5
2666 Male, age 74, left hemisphere 76.3
1830 Male, age 51, unknown 76.2
2019 Male, age 18, unknown 76.1
1833 Male, age 53, unknown 76.0
2411 Female, age 72, unknown 75.4
2219 Male, age 76, both hemispheres 74.7
1870 Female, age 42, unknown 71.9
Dorsal raphe nucleus
nTPM: 66.0
2750 Male, age 76, both hemispheres 73.0
1828 Male, age 53, unknown 66.5
2016 Female, age 72, unknown 64.4
2047 Male, age 72, unknown 63.4
2298 Female, age 72, unknown 62.5
Inferior colliculus
nTPM: 72.0
2849 Male, age 72, unknown 75.2
1890 Male, age 53, unknown 72.1
1848 Female, age 42, unknown 71.4
2097 Female, age 72, unknown 69.3
Median raphe nucleus
nTPM: 65.5
2220 Male, age 76, midline 65.5
Pedunculopontine tegmental nucleus
nTPM: 70.3
1921 Female, age 85, both hemispheres 72.0
2338 Male, age 61, both hemispheres 69.8
2334 Male, age 80, both hemispheres 69.2
Periaquaductal grey, anterior
nTPM: 74.2
1795 Male, age 51, unknown 76.3
2502 Female, age 75, unknown 73.6
1947 Male, age 18, unknown 72.7
Periaquaductal grey, dorsal
nTPM: 69.2
1831 Male, age 72, unknown 72.6
2464 Female, age 72, unknown 70.5
2850 Male, age 76, both hemispheres 68.5
1840 Male, age 53, unknown 65.2
Periaquaductal grey, lateral
nTPM: 71.9
2053 Male, age 18, unknown 74.4
2272 Male, age 74, both hemispheres 72.7
2140 Male, age 76, both hemispheres 68.7
Pretectal area
nTPM: 78.6
2667 Female, age 75, unknown 86.0
1816 Male, age 51, unknown 84.6
2407 Male, age 75, both hemispheres 83.7
2007 Male, age 72, unknown 83.0
1817 Female, age 42, unknown 82.4
1815 Male, age 53, unknown 82.3
1944 Female, age 72, unknown 79.1
2316 Male, age 76, right hemisphere 74.7
2273 Male, age 74, both hemispheres 72.0
2825 Male, age 18, unknown 70.8
2224 Female, age 72, unknown 65.5
Red nucleus
nTPM: 77.8
2588 Male, age 74, left hemisphere 85.0
2584 Male, age 75, left hemisphere 84.0
2823 Male, age 76, right hemisphere 81.2
2227 Male, age 72, unknown 79.3
2769 Male, age 72, unknown 79.1
1904 Male, age 53, unknown 79.0
2785 Male, age 18, unknown 78.4
1865 Male, age 51, unknown 78.2
2503 Female, age 72, unknown 75.1
1821 Female, age 72, unknown 73.3
1954 Female, age 42, unknown 72.3
2725 Female, age 75, unknown 68.4
Substantia nigra
nTPM: 72.0
2583 Male, age 75, right hemisphere 80.5
2665 Male, age 74, both hemispheres 80.2
1889 Female, age 72, unknown 75.8
2590 Female, age 75, unknown 75.0
2699 Male, age 18, unknown 75.0
1851 Male, age 51, unknown 70.3
1941 Male, age 53, unknown 70.3
1916 Female, age 42, unknown 69.0
2409 Female, age 72, unknown 65.6
2241 Male, age 72, unknown 58.5
Superior colliculus
nTPM: 78.5
2664 Male, age 75, both hemispheres 88.0
2261 Male, age 18, unknown 82.1
1995 Male, age 72, unknown 81.3
1913 Female, age 42, unknown 80.0
2087 Female, age 72, unknown 78.5
2668 Female, age 75, unknown 78.1
1796 Male, age 53, unknown 77.1
1895 Male, age 76, right hemisphere 76.8
1839 Male, age 51, unknown 74.0
2587 Male, age 74, left hemisphere 69.2
Ventral tegmental area
nTPM: 69.5
2021 Male, age 53, unknown 71.9
2223 Female, age 72, unknown 70.6
2410 Female, age 72, unknown 70.1
2218 Male, age 76, both hemispheres 69.3
1942 Male, age 51, unknown 68.2
1915 Female, age 42, unknown 67.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 63.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 63.3
Samples: 139

Max nTPM: 105.9
Min nTPM: 40.8
Std nTPM: 10.7
Median nTPM: 61.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 105.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 97.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 93.9
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 90.8
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 87.0
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 83.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 82.9
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 82.6
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 79.6
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 79.2
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 78.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 32.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 32.3
FF:10158-103A5 76 years, female 32.3

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The Human Protein Atlas

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