MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:73.3 nTPM
HPA:73.3 nTPM
GTEx:72.9 nTPM
FANTOM5:96.1 Scaled Tags Per Million
Pig:34.1 nTPM
Mouse:13.5 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 73.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 61.3
2828 Female, age 72, unknown 70.0
2019 Male, age 18, unknown 67.3
2586 Male, age 75, left hemisphere 63.7
1870 Female, age 42, unknown 63.5
1830 Male, age 51, unknown 63.0
2411 Female, age 72, unknown 63.0
1833 Male, age 53, unknown 61.8
2666 Male, age 74, left hemisphere 57.6
1827 Male, age 72, unknown 55.5
2219 Male, age 76, both hemispheres 47.5
Dorsal raphe nucleus
nTPM: 56.5
2016 Female, age 72, unknown 61.1
2750 Male, age 76, both hemispheres 58.3
1828 Male, age 53, unknown 57.3
2298 Female, age 72, unknown 54.7
2047 Male, age 72, unknown 51.0
Inferior colliculus
nTPM: 51.4
1848 Female, age 42, unknown 52.9
1890 Male, age 53, unknown 52.3
2849 Male, age 72, unknown 51.2
2097 Female, age 72, unknown 49.3
Median raphe nucleus
nTPM: 46.1
2220 Male, age 76, midline 46.1
Pedunculopontine tegmental nucleus
nTPM: 52.2
1921 Female, age 85, both hemispheres 54.1
2334 Male, age 80, both hemispheres 53.5
2338 Male, age 61, both hemispheres 49.1
Periaquaductal grey, anterior
nTPM: 55.9
2502 Female, age 75, unknown 58.8
1947 Male, age 18, unknown 54.5
1795 Male, age 51, unknown 54.3
Periaquaductal grey, dorsal
nTPM: 52.2
2464 Female, age 72, unknown 57.2
1831 Male, age 72, unknown 53.4
2850 Male, age 76, both hemispheres 50.3
1840 Male, age 53, unknown 47.8
Periaquaductal grey, lateral
nTPM: 56.9
2272 Male, age 74, both hemispheres 58.7
2053 Male, age 18, unknown 58.3
2140 Male, age 76, both hemispheres 53.8
Pretectal area
nTPM: 57.4
2316 Male, age 76, right hemisphere 65.5
1815 Male, age 53, unknown 61.8
2667 Female, age 75, unknown 60.4
2273 Male, age 74, both hemispheres 59.9
1817 Female, age 42, unknown 58.9
1944 Female, age 72, unknown 56.5
2825 Male, age 18, unknown 55.7
2224 Female, age 72, unknown 53.8
2407 Male, age 75, both hemispheres 53.8
2007 Male, age 72, unknown 53.7
1816 Male, age 51, unknown 51.1
Red nucleus
nTPM: 73.3
1904 Male, age 53, unknown 81.3
1865 Male, age 51, unknown 79.8
2823 Male, age 76, right hemisphere 78.5
2227 Male, age 72, unknown 77.0
2503 Female, age 72, unknown 76.9
2769 Male, age 72, unknown 75.5
1954 Female, age 42, unknown 72.1
1821 Female, age 72, unknown 71.6
2588 Male, age 74, left hemisphere 70.1
2785 Male, age 18, unknown 68.1
2725 Female, age 75, unknown 66.6
2584 Male, age 75, left hemisphere 61.7
Substantia nigra
nTPM: 61.6
2583 Male, age 75, right hemisphere 67.7
2409 Female, age 72, unknown 67.1
2590 Female, age 75, unknown 66.0
1851 Male, age 51, unknown 65.2
2699 Male, age 18, unknown 64.7
2665 Male, age 74, both hemispheres 60.1
2241 Male, age 72, unknown 59.6
1916 Female, age 42, unknown 55.6
1889 Female, age 72, unknown 55.2
1941 Male, age 53, unknown 54.7
Superior colliculus
nTPM: 59.9
1995 Male, age 72, unknown 73.2
1913 Female, age 42, unknown 67.8
1796 Male, age 53, unknown 58.8
2087 Female, age 72, unknown 58.8
1839 Male, age 51, unknown 58.7
2664 Male, age 75, both hemispheres 58.3
2587 Male, age 74, left hemisphere 58.2
1895 Male, age 76, right hemisphere 55.8
2261 Male, age 18, unknown 55.6
2668 Female, age 75, unknown 53.7
Ventral tegmental area
nTPM: 60.1
2410 Female, age 72, unknown 67.5
2021 Male, age 53, unknown 60.1
1915 Female, age 42, unknown 59.8
1942 Male, age 51, unknown 59.8
2223 Female, age 72, unknown 57.0
2218 Male, age 76, both hemispheres 56.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 72.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 72.9
Samples: 139

Max nTPM: 180.6
Min nTPM: 10.6
Std nTPM: 27.8
Median nTPM: 67.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 180.6
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 145.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 138.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 131.8
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 131.0
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 124.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 123.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 121.1
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 116.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 116.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 115.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 96.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 96.1
FF:10158-103A5 76 years, female 96.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 34.1
Pig sample Sample description nTPM
Midbrain
nTPM: 26.3
Samples: 4

Max nTPM: 36.7
Min nTPM: 20.3
Sample A Female 36.7
Sample B Female 24.8
Sample C Male 23.5
Sample D Male 20.3
Periaqueductal gray
nTPM: 20.3
Samples: 3

Max nTPM: 21.5
Min nTPM: 18.6
Sample B Female 20.8
Sample C Male 21.5
Sample D Male 18.6
Substantia nigra
nTPM: 30.9
Samples: 4

Max nTPM: 40.2
Min nTPM: 24.5
Sample A Female 30.9
Sample B Female 40.2
Sample C Male 24.5
Sample D Male 28.0
Superior colliculi
nTPM: 34.1
Samples: 4

Max nTPM: 49.7
Min nTPM: 24.6
Sample A Female 37.3
Sample B Female 49.7
Sample C Male 24.8
Sample D Male 24.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 13.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 13.6
Samples: 4

Max nTPM: 14.7
Min nTPM: 12.6
Sample A Male 13.9
Sample B Male 13.0
Sample C Female 12.6
Sample D Female 14.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
69980160 Antisense, RP_050512_04_A04, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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