MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:307.5 nTPM
HPA:307.5 nTPM
GTEx:395.3 nTPM
FANTOM5:313.2 Scaled Tags Per Million
Pig:226.9 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 307.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 273.4
2666 Male, age 74, left hemisphere 306.3
1870 Female, age 42, unknown 282.6
1827 Male, age 72, unknown 279.5
2219 Male, age 76, both hemispheres 277.0
2586 Male, age 75, left hemisphere 274.7
2411 Female, age 72, unknown 269.1
1833 Male, age 53, unknown 268.5
2828 Female, age 72, unknown 267.1
1830 Male, age 51, unknown 261.6
2019 Male, age 18, unknown 247.8
Dorsal raphe nucleus
nTPM: 287.1
2047 Male, age 72, unknown 305.6
2298 Female, age 72, unknown 301.0
1828 Male, age 53, unknown 286.2
2750 Male, age 76, both hemispheres 283.1
2016 Female, age 72, unknown 259.7
Inferior colliculus
nTPM: 265.0
2849 Male, age 72, unknown 272.0
2097 Female, age 72, unknown 263.9
1848 Female, age 42, unknown 263.3
1890 Male, age 53, unknown 260.8
Median raphe nucleus
nTPM: 307.5
2220 Male, age 76, midline 307.5
Pedunculopontine tegmental nucleus
nTPM: 292.3
2334 Male, age 80, both hemispheres 305.5
2338 Male, age 61, both hemispheres 293.1
1921 Female, age 85, both hemispheres 278.3
Periaquaductal grey, anterior
nTPM: 288.1
1947 Male, age 18, unknown 317.2
1795 Male, age 51, unknown 284.4
2502 Female, age 75, unknown 262.8
Periaquaductal grey, dorsal
nTPM: 266.9
2850 Male, age 76, both hemispheres 282.7
1840 Male, age 53, unknown 267.0
1831 Male, age 72, unknown 265.4
2464 Female, age 72, unknown 252.7
Periaquaductal grey, lateral
nTPM: 260.6
2053 Male, age 18, unknown 267.8
2140 Male, age 76, both hemispheres 259.2
2272 Male, age 74, both hemispheres 254.8
Pretectal area
nTPM: 276.5
2224 Female, age 72, unknown 293.8
1816 Male, age 51, unknown 293.5
1817 Female, age 42, unknown 292.6
2667 Female, age 75, unknown 286.8
2007 Male, age 72, unknown 284.5
2825 Male, age 18, unknown 282.2
1815 Male, age 53, unknown 280.4
1944 Female, age 72, unknown 275.4
2273 Male, age 74, both hemispheres 254.0
2407 Male, age 75, both hemispheres 251.9
2316 Male, age 76, right hemisphere 247.0
Red nucleus
nTPM: 266.1
1821 Female, age 72, unknown 290.7
2725 Female, age 75, unknown 279.6
1954 Female, age 42, unknown 267.8
2584 Male, age 75, left hemisphere 265.8
2588 Male, age 74, left hemisphere 264.9
1865 Male, age 51, unknown 264.1
2503 Female, age 72, unknown 263.9
2769 Male, age 72, unknown 262.4
2823 Male, age 76, right hemisphere 260.0
1904 Male, age 53, unknown 259.6
2227 Male, age 72, unknown 259.2
2785 Male, age 18, unknown 255.6
Substantia nigra
nTPM: 291.1
1916 Female, age 42, unknown 328.0
1851 Male, age 51, unknown 304.6
2665 Male, age 74, both hemispheres 300.9
1889 Female, age 72, unknown 295.3
2699 Male, age 18, unknown 289.5
1941 Male, age 53, unknown 288.6
2241 Male, age 72, unknown 285.6
2409 Female, age 72, unknown 278.6
2583 Male, age 75, right hemisphere 270.2
2590 Female, age 75, unknown 270.0
Superior colliculus
nTPM: 265.7
2587 Male, age 74, left hemisphere 281.8
2668 Female, age 75, unknown 281.0
1796 Male, age 53, unknown 280.0
1895 Male, age 76, right hemisphere 266.8
2261 Male, age 18, unknown 266.6
1839 Male, age 51, unknown 265.1
2087 Female, age 72, unknown 260.6
1913 Female, age 42, unknown 258.2
2664 Male, age 75, both hemispheres 251.2
1995 Male, age 72, unknown 246.0
Ventral tegmental area
nTPM: 290.1
1915 Female, age 42, unknown 307.4
2218 Male, age 76, both hemispheres 305.6
2410 Female, age 72, unknown 291.6
2021 Male, age 53, unknown 283.1
2223 Female, age 72, unknown 279.0
1942 Male, age 51, unknown 273.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 395.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 395.3
Samples: 139

Max nTPM: 654.3
Min nTPM: 224.7
Std nTPM: 88.4
Median nTPM: 390.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 654.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 654.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 612.8
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 590.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 580.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 577.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 576.0
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 567.5
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 567.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 562.5
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 544.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 313.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 313.2
FF:10158-103A5 76 years, female 313.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 226.9
Pig sample Sample description nTPM
Midbrain
nTPM: 206.4
Samples: 4

Max nTPM: 259.9
Min nTPM: 182.1
Sample A Female 194.4
Sample B Female 182.1
Sample C Male 259.9
Sample D Male 189.1
Periaqueductal gray
nTPM: 155.5
Samples: 3

Max nTPM: 180.9
Min nTPM: 140.9
Sample B Female 144.6
Sample C Male 180.9
Sample D Male 140.9
Substantia nigra
nTPM: 205.3
Samples: 4

Max nTPM: 271.1
Min nTPM: 151.3
Sample A Female 271.1
Sample B Female 151.4
Sample C Male 247.3
Sample D Male 151.3
Superior colliculi
nTPM: 226.9
Samples: 4

Max nTPM: 278.9
Min nTPM: 152.5
Sample A Female 258.0
Sample B Female 152.5
Sample C Male 278.9
Sample D Male 218.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.