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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:275.9 nTPM
HPA:275.9 nTPM
GTEx:306.2 nTPM
FANTOM5:569.9 Scaled Tags Per Million
Pig:215.0 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 275.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 267.7
2565 Male, age 75, midline 286.3
1981 Female, age 72, midline 280.0
2194 Female, age 79, both hemispheres 269.1
2048 Male, age 55, midline 252.3
2816 Male, age 47, midline 251.0
Cervical spinal cord, dorsal horn
nTPM: 275.9
2069 Male, age 47, both hemispheres 290.8
2173 Female, age 72, unknown 284.6
2296 Male, age 66, both hemispheres 277.5
2721 Male, age 90, both hemispheres 268.3
1877 Male, age 55, unknown 267.8
2297 Male, age 75, both hemispheres 266.2
Cervical spinal cord, ventral horn
nTPM: 275.2
2480 Male, age 75, both hemispheres 283.8
2809 Male, age 90, both hemispheres 281.8
2098 Female, age 72, unknown 278.7
2295 Male, age 66, both hemispheres 272.2
2068 Male, age 55, unknown 270.2
2820 Female, age 79, both hemispheres 264.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 306.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 306.2
Samples: 159

Max nTPM: 564.8
Min nTPM: 186.7
Std nTPM: 57.3
Median nTPM: 300.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 564.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 489.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 476.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 465.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 446.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 438.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 428.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 407.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 397.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 394.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 383.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 375.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 374.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 374.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 374.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 369.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 365.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 364.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 364.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 363.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 360.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 359.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 358.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 355.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 355.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 355.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 354.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 353.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 352.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 351.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 347.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 347.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 347.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 341.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 339.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 337.0
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 336.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 335.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 334.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 334.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 333.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 332.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 330.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 329.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 326.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 326.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 325.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 324.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 323.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 322.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 322.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 322.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 322.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 321.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 321.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 319.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 319.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 318.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 317.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 317.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 316.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 314.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 312.2
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 311.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 311.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 311.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 310.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 310.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 309.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 308.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 308.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 307.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 307.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 305.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 305.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 304.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 303.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 301.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 301.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 300.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 299.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 299.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 298.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 297.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 297.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 297.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 297.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 297.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 296.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 295.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 295.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 294.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 294.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 293.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 293.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 290.0
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 289.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 287.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 286.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 286.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 286.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 286.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 285.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 284.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 284.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 283.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 282.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 281.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 278.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 277.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 277.6
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 277.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 276.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 276.5
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 276.4
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 275.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 275.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 275.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 274.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 274.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 273.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 273.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 273.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 270.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 269.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 267.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 266.4
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 265.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 265.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 263.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 260.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 255.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 251.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 245.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 245.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 244.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 243.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 241.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 241.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 241.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 240.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 239.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 237.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 236.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 236.5
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 232.5
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 231.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 230.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 229.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 227.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 226.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 225.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 219.6
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 219.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 214.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 207.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 201.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 193.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 186.7
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 569.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 569.9
FF:10181-103D1 60 years, female 867.5
FF:10159-103A6 76 years, female 272.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 215.0
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 182.2
Samples: 4

Max nTPM: 204.5
Min nTPM: 153.5
Sample A Female 185.2
Sample B Female 153.5
Sample C Male 185.4
Sample D Male 204.5
Ventral spinal cord
nTPM: 215.0
Samples: 4

Max nTPM: 262.6
Min nTPM: 183.2
Sample A Female 207.6
Sample B Female 183.2
Sample C Male 262.6
Sample D Male 206.5

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