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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glandular cells: High
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:229.1 nTPM
HPA:153.5 nTPM
GTEx:229.1 nTPM
FANTOM5:378.5 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA044708
Glandular cells High


SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 153.5
overview
Male, age 65
Small intestine sample 232
nTPM: 138.2
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 162.1
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 158.1
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 155.4

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 229.1
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 229.1
Samples: 187

Max nTPM: 465.9
Min nTPM: 161.1
Std nTPM: 44.9
Median nTPM: 222.9
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 465.9
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 453.3
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 377.1
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 369.3
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 341.8
GTEX-1192X-2526-SM-59868 50-59 years, male 335.3
GTEX-14PK6-1626-SM-6871I 70-79 years, female 333.8
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 319.1
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 318.3
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 313.9
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 312.2
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 307.3
GTEX-111YS-1426-SM-5GID8 60-69 years, male 302.7
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 293.8
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 293.7
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 288.3
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 287.3
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 282.0
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 280.2
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 275.2
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 273.9
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 272.0
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 269.0
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 266.2
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 262.7
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 262.1
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 259.5
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 257.7
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 256.5
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 254.7
GTEX-14PKU-1626-SM-6871C 40-49 years, female 254.1
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 253.7
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 251.4
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 249.9
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 249.9
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 249.4
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 249.3
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 248.2
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 246.8
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 246.8
GTEX-YFCO-1326-SM-664NV 40-49 years, male 246.1
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 246.0
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 245.8
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 244.4
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 244.2
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 243.9
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 243.0
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 242.3
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 241.9
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 241.2
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 240.9
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 240.5
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 240.0
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 239.9
GTEX-117YX-0326-SM-5GICL 50-59 years, male 239.8
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 239.3
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 239.0
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 238.6
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 238.1
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 237.7
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 237.6
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 236.5
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 236.2
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 235.2
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 234.8
GTEX-1122O-1326-SM-5H11F 60-69 years, female 234.6
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 234.6
GTEX-183FY-1626-SM-793D8 20-29 years, male 234.6
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 234.4
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 233.9
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 233.0
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 231.3
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 231.1
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 231.0
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 230.1
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 230.1
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 230.0
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 230.0
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 229.5
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 228.7
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 227.9
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 227.8
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 227.0
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 226.7
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 226.7
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 226.5
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 225.5
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 225.4
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 225.2
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 224.9
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 223.8
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 223.4
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 223.2
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 222.9
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 222.4
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 222.0
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 221.9
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 221.9
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 221.5
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 221.1
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 220.9
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 220.9
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 220.2
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 219.7
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 219.4
GTEX-144GM-1026-SM-79OKU 20-29 years, male 218.9
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 218.6
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 218.4
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 218.1
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 218.1
GTEX-13111-1426-SM-5DUW3 50-59 years, male 217.5
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 217.1
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 216.3
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 216.0
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 215.8
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 215.7
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 215.4
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 214.0
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 213.5
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 213.4
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 213.1
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 212.6
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 210.2
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 210.2
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 209.7
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 209.0
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 209.0
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 208.8
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 208.1
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 206.4
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 206.2
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 206.2
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 205.4
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 205.3
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 204.5
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 204.1
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 203.3
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 202.5
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 202.5
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 202.5
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 202.1
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 199.7
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 198.5
GTEX-ZTSS-0926-SM-59865 40-49 years, male 198.2
GTEX-14PN3-2026-SM-68729 60-69 years, female 197.4
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 196.5
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 196.2
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 195.5
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 194.6
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 194.5
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 194.3
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 193.8
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 193.4
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 193.2
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 192.8
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 190.3
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 190.0
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 189.5
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 188.8
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 188.6
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 188.3
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 188.1
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 188.1
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 186.7
GTEX-1C475-1426-SM-793CH 40-49 years, female 186.6
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 186.6
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 186.3
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 185.5
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 184.7
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 184.0
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 184.0
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 180.1
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 180.1
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 179.3
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 179.2
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 177.6
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 176.0
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 174.9
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 174.2
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 171.1
GTEX-13113-1226-SM-5EGHT 60-69 years, female 171.0
GTEX-13O61-1326-SM-5KM31 60-69 years, male 169.9
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 168.6
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 164.3
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 164.2
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 162.3
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 161.1
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 378.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 378.5
FF:10024-101D6 15,40,85 years, mixed 378.5

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The Human Protein Atlas project is funded
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