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TISSUE PRIMARY DATA THALAMUS Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
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VALIDATION
Dictionary
Tissue proteome
Thalamus
THALAMUS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:300.6 nTPM
HPA:300.6 nTPM
FANTOM5:268.4 Scaled Tags Per Million
Pig:247.1 nTPM

THALAMUS - HPA Brain RNA-seq
Max nTPM 300.6
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 283.0
2396 Male, age 61, right hemisphere 316.5
2032 Female, age 42, unknown 269.4
2497 Male, age 66, unknown 263.0
Centromedial thalamic nucleus
nTPM: 261.2
2401 Male, age 76, right hemisphere 273.3
2279 Female, age 85, left hemisphere 249.1
Habenula
nTPM: 290.9
1957 Male, age 80, both hemispheres 323.4
2203 Male, age 61, left hemisphere 290.0
2276 Male, age 66, unknown 283.5
2252 Male, age 62, unknown 266.8
Lateral geniculate body
nTPM: 285.7
1953 Male, age 62, unknown 313.5
2035 Female, age 72, unknown 294.3
2399 Male, age 61, left hemisphere 293.4
2575 Female, age 94, right hemisphere 286.7
2106 Female, age 67, right hemisphere 284.0
2857 Male, age 74, right hemisphere 279.2
2659 Male, age 66, unknown 271.9
2841 Male, age 80, both hemispheres 262.6
Lateral thalamic nuclei
nTPM: 279.2
2573 Female, age 94, left hemisphere 309.5
2765 Female, age 67, both hemispheres 280.8
2577 Male, age 74, both hemispheres 270.9
1903 Male, age 76, left hemisphere 267.7
2661 Female, age 72, unknown 267.3
Medial dorsal thalamic nucleus
nTPM: 289.2
2572 Female, age 94, right hemisphere 361.5
2498 Male, age 66, unknown 307.5
2026 Male, age 62, unknown 299.4
1971 Male, age 61, right hemisphere 297.6
2039 Female, age 72, unknown 291.5
1810 Male, age 48, unknown 287.6
1930 Female, age 42, unknown 284.2
2492 Male, age 75, right hemisphere 282.6
2576 Male, age 74, both hemispheres 282.1
2402 Female, age 67, both hemispheres 272.7
1859 Male, age 76, both hemispheres 270.3
2283 Male, age 80, right hemisphere 265.5
2660 Female, age 72, unknown 257.4
Medial geniculate body
nTPM: 273.8
2650 Female, age 94, left hemisphere 299.9
1811 Female, age 42, unknown 287.3
2571 Male, age 75, right hemisphere 273.5
2049 Male, age 76, both hemispheres 271.8
2657 Male, age 74, right hemisphere 266.3
2207 Male, age 80, right hemisphere 260.9
2217 Female, age 72, unknown 256.5
Nucleus reuniens
nTPM: 277.3
2212 Female, age 67, left hemisphere 303.7
2205 Male, age 80, left hemisphere 273.9
2210 Female, age 85, left hemisphere 254.3
Nucleus rhomboideus
nTPM: 266.8
2206 Male, age 80, both hemispheres 284.0
2213 Female, age 67, left hemisphere 269.6
2280 Female, age 85, left hemisphere 246.8
Posterior thalamic nucleus
nTPM: 288.4
2649 Female, age 94, both hemispheres 356.2
2655 Male, age 74, right hemisphere 275.0
2495 Female, age 67, right hemisphere 267.9
2266 Male, age 76, right hemisphere 254.4
Pulvinar
nTPM: 279.2
2398 Male, age 61, left hemisphere 296.0
1972 Male, age 62, unknown 292.9
2724 Male, age 74, right hemisphere 288.7
2582 Female, age 72, unknown 280.5
1929 Male, age 48, unknown 280.0
1932 Male, age 80, right hemisphere 278.9
2499 Male, age 66, unknown 276.2
2496 Female, age 67, right hemisphere 267.9
1899 Female, age 42, unknown 267.0
2214 Male, age 76, right hemisphere 263.9
Subthalamic nucleus
nTPM: 284.2
2406 Female, age 72, unknown 345.7
2124 Male, age 62, unknown 293.8
2779 Female, age 42, unknown 288.5
2658 Male, age 74, both hemispheres 282.8
2275 Male, age 66, unknown 276.9
2282 Male, age 61, both hemispheres 272.9
2216 Male, age 48, unknown 259.9
2056 Female, age 72, unknown 253.4
Ventral posterolateral thalamic nucleus
nTPM: 271.8
2397 Male, age 61, right hemisphere 292.9
2740 Male, age 76, right hemisphere 275.4
2570 Male, age 75, right hemisphere 273.5
2197 Male, age 80, both hemispheres 269.3
2578 Male, age 74, both hemispheres 266.9
2581 Female, age 72, unknown 252.6
Ventral posteromedial thalamic nucleus
nTPM: 267.7
2202 Male, age 61, left hemisphere 289.6
2653 Male, age 74, both hemispheres 274.8
2281 Male, age 75, right hemisphere 262.4
2758 Male, age 80, both hemispheres 258.5
2127 Male, age 76, right hemisphere 253.4
Ventral thalamic nuclei
nTPM: 276.3
1845 Male, age 48, unknown 298.6
2580 Male, age 66, unknown 287.0
1912 Female, age 42, unknown 285.3
1860 Male, age 76, both hemispheres 280.3
2285 Male, age 62, unknown 275.1
2291 Female, age 72, unknown 267.5
2858 Female, age 72, unknown 265.7
2652 Male, age 74, left hemisphere 263.9
2204 Male, age 80, both hemispheres 263.1
Ventromedial nucleus
nTPM: 300.6
1982 Female, age 72, unknown 302.5
1822 Female, age 42, unknown 298.7
Zona incerta
nTPM: 268.4
2215 Male, age 66, unknown 278.9
2822 Male, age 74, right hemisphere 276.7
2208 Male, age 80, right hemisphere 267.5
2403 Male, age 62, unknown 261.2
2663 Female, age 72, unknown 257.5

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 268.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 268.4
FF:10154-103A1 76 years, female 268.4

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 247.1
Pig sample Sample description nTPM
Thalamus
nTPM: 247.1
Samples: 4

Max nTPM: 349.3
Min nTPM: 181.7
Sample A Female 349.3
Sample B Female 192.7
Sample C Male 264.6
Sample D Male 181.7

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