BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: High
Neuronal cells: High
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:12.6 nTPM
HPA:12.6 nTPM
GTEx:24.2 nTPM
FANTOM5:23.9 Scaled Tags Per Million
Mouse:4.3 nTPM
Allen mouse:0.7 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA045350
Glial cells High
Neuronal cells High



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 12.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 12.2
2481 Female, age 94, left hemisphere 13.9
1781 Male, age 74, unknown 12.8
2289 Male, age 61, right hemisphere 12.7
2288 Male, age 75, left hemisphere 12.4
1857 Female, age 85, left hemisphere 11.7
2846 Female, age 79, unknown 11.5
2290 Female, age 72, unknown 11.4
1854 Male, age 80, left hemisphere 11.2
Claustrum
nTPM: 11.5
2198 Male, age 80, both hemispheres 12.7
2292 Female, age 85, both hemispheres 12.5
2284 Female, age 91, both hemispheres 11.8
2491 Male, age 75, both hemispheres 11.8
1956 Male, age 74, unknown 11.3
2196 Female, age 79, unknown 11.1
2392 Female, age 94, both hemispheres 10.8
2645 Female, age 72, unknown 10.8
2568 Male, age 61, both hemispheres 10.5
Globus pallidus, externus
nTPM: 12.3
1996 Male, age 80, right hemisphere 14.9
2772 Female, age 79, unknown 12.5
2567 Female, age 72, unknown 11.7
2395 Male, age 75, both hemispheres 11.5
2646 Male, age 61, right hemisphere 11.0
Globus pallidus, internus
nTPM: 12.6
2483 Female, age 94, right hemisphere 14.1
2287 Male, age 75, right hemisphere 13.7
2778 Female, age 91, both hemispheres 13.2
2111 Female, age 85, right hemisphere 13.1
2037 Male, age 80, right hemisphere 12.2
2566 Female, age 72, unknown 11.3
1818 Male, age 74, unknown 11.0
Nucleus accumbens
nTPM: 12.3
1806 Female, age 85, left hemisphere 12.8
2732 Male, age 80, right hemisphere 12.8
2286 Male, age 75, left hemisphere 12.6
2698 Female, age 72, unknown 12.6
2391 Female, age 94, left hemisphere 12.3
1783 Male, age 74, unknown 12.2
2824 Male, age 61, right hemisphere 11.7
1856 Female, age 91, right hemisphere 11.4
Nucleus basalis of Meynert
nTPM: 11.0
2569 Male, age 61, both hemispheres 12.0
2484 Female, age 94, left hemisphere 11.2
2821 Male, age 75, both hemispheres 10.5
2393 Male, age 80, right hemisphere 10.3
Nucleus of the diagonal band
nTPM: 11.4
1979 Male, age 74, unknown 13.5
2195 Female, age 85, both hemispheres 11.6
1812 Female, age 91, both hemispheres 10.9
2775 Male, age 80, right hemisphere 10.8
2029 Male, age 61, right hemisphere 10.3
Olfactory tubercle
nTPM: 10.8
1998 Female, age 91, both hemispheres 11.6
2856 Male, age 75, right hemisphere 10.7
1846 Male, age 80, right hemisphere 10.5
2487 Female, age 94, left hemisphere 10.5
Putamen
nTPM: 11.3
1838 Male, age 80, right hemisphere 11.8
2466 Female, age 79, unknown 11.8
2482 Female, age 94, left hemisphere 11.7
1937 Female, age 91, right hemisphere 11.3
2647 Male, age 75, left hemisphere 11.3
2489 Female, age 72, unknown 11.1
1829 Male, age 74, unknown 10.0
Septal nuclei
nTPM: 11.9
1960 Male, age 74, unknown 12.4
2199 Male, age 80, right hemisphere 12.2
2629 Female, age 94, right hemisphere 12.2
2059 Female, age 85, both hemispheres 11.9
2009 Female, age 91, both hemispheres 11.5
2031 Female, age 72, unknown 11.5
2394 Male, age 61, left hemisphere 11.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 24.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 21.5
Samples: 246

Max nTPM: 48.1
Min nTPM: 7.1
Std nTPM: 5.7
Median nTPM: 20.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 48.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 42.8
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 37.4
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 36.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 35.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 35.6
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 34.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 34.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 33.8
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 33.3
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 32.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 24.2
Samples: 246

Max nTPM: 59.2
Min nTPM: 8.6
Std nTPM: 6.6
Median nTPM: 23.4
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 59.2
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 52.3
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 42.2
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 41.6
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 38.0
GTEX-17MF6-0011-R6b-SM-7LG6G 40-49 years, male 37.6
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 37.6
GTEX-12WSC-0011-R6b-SM-5LU99 50-59 years, male 36.3
GTEX-1HBPH-0011-R6a-SM-CKZOV 40-49 years, female 36.1
GTEX-1JJEA-0011-R6a-SM-EXUS1 60-69 years, male 36.1
GTEX-145LU-0011-R6a-SM-5S2V6 50-59 years, male 35.8
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Brain - Putamen (basal ganglia)
Average nTPM: 24.1
Samples: 205

Max nTPM: 50.2
Min nTPM: 7.5
Std nTPM: 5.8
Median nTPM: 23.5
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 50.2
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 42.8
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 39.3
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 39.2
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 37.8
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 37.0
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 36.7
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 35.8
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 35.2
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 35.1
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 34.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 23.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 13.6
FF:10164-103B2 76 years, female 13.6
Globus pallidus
Scaled Tags Per Million: 23.9
FF:10175-103C4 60 years, female 33.9
FF:10161-103A8 76 years, female 13.9
Nucleus accumbens
Scaled Tags Per Million: 10.0
FF:10037-101F1 23-56 years, mixed 10.0
Putamen
Scaled Tags Per Million: 18.9
FF:10176-103C5 60 years, female 18.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 4.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 3.4
Samples: 4

Max nTPM: 4.3
Min nTPM: 1.4
Sample A Male 4.1
Sample B Male 4.3
Sample C Female 1.4
Sample D Female 3.6
Septum
nTPM: 4.3
Samples: 4

Max nTPM: 5.3
Min nTPM: 3.5
Sample A Male 3.6
Sample B Male 5.3
Sample C Female 4.7
Sample D Female 3.5
Ventral forebrain
nTPM: 3.5
Samples: 4

Max nTPM: 5.2
Min nTPM: 2.5
Sample A Male 3.5
Sample B Male 2.5
Sample C Female 5.2
Sample D Female 2.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.3
68546001 Antisense, RP_050120_01_H06, Mouse strain C57BL/6J (56 days, male) 0.3
Pallidum
Expression energy: 0.7
68546001 Antisense, RP_050120_01_H06, Mouse strain C57BL/6J (56 days, male) 0.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
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