MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:70.8 nTPM
HPA:70.8 nTPM
GTEx:161.3 nTPM
FANTOM5:45.5 Scaled Tags Per Million
Pig:64.0 nTPM
Mouse:92.4 nTPM
Allen mouse:2.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 70.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 70.8
2586 Male, age 75, left hemisphere 87.2
2666 Male, age 74, left hemisphere 77.4
2828 Female, age 72, unknown 74.8
1827 Male, age 72, unknown 74.0
2411 Female, age 72, unknown 69.4
1830 Male, age 51, unknown 66.9
1833 Male, age 53, unknown 65.2
1870 Female, age 42, unknown 65.0
2019 Male, age 18, unknown 64.8
2219 Male, age 76, both hemispheres 63.6
Dorsal raphe nucleus
nTPM: 65.1
2750 Male, age 76, both hemispheres 66.8
2047 Male, age 72, unknown 66.4
1828 Male, age 53, unknown 65.5
2016 Female, age 72, unknown 64.3
2298 Female, age 72, unknown 62.6
Inferior colliculus
nTPM: 62.5
2849 Male, age 72, unknown 64.9
1848 Female, age 42, unknown 63.0
1890 Male, age 53, unknown 61.8
2097 Female, age 72, unknown 60.2
Median raphe nucleus
nTPM: 65.1
2220 Male, age 76, midline 65.1
Pedunculopontine tegmental nucleus
nTPM: 65.0
2334 Male, age 80, both hemispheres 68.7
1921 Female, age 85, both hemispheres 64.7
2338 Male, age 61, both hemispheres 61.4
Periaquaductal grey, anterior
nTPM: 68.3
1795 Male, age 51, unknown 70.1
1947 Male, age 18, unknown 68.2
2502 Female, age 75, unknown 66.6
Periaquaductal grey, dorsal
nTPM: 62.5
2464 Female, age 72, unknown 63.6
1840 Male, age 53, unknown 63.1
1831 Male, age 72, unknown 63.0
2850 Male, age 76, both hemispheres 60.4
Periaquaductal grey, lateral
nTPM: 60.3
2053 Male, age 18, unknown 63.8
2272 Male, age 74, both hemispheres 59.4
2140 Male, age 76, both hemispheres 57.8
Pretectal area
nTPM: 65.4
2007 Male, age 72, unknown 70.9
1817 Female, age 42, unknown 69.1
2825 Male, age 18, unknown 69.1
1815 Male, age 53, unknown 68.8
2407 Male, age 75, both hemispheres 67.5
1816 Male, age 51, unknown 67.1
2667 Female, age 75, unknown 64.6
1944 Female, age 72, unknown 64.5
2224 Female, age 72, unknown 61.0
2316 Male, age 76, right hemisphere 59.8
2273 Male, age 74, both hemispheres 57.3
Red nucleus
nTPM: 67.4
2584 Male, age 75, left hemisphere 76.7
2769 Male, age 72, unknown 69.3
2588 Male, age 74, left hemisphere 68.2
2227 Male, age 72, unknown 67.9
2785 Male, age 18, unknown 67.3
1821 Female, age 72, unknown 67.0
2725 Female, age 75, unknown 66.5
1954 Female, age 42, unknown 66.1
1865 Male, age 51, unknown 65.6
2823 Male, age 76, right hemisphere 65.1
1904 Male, age 53, unknown 64.8
2503 Female, age 72, unknown 64.7
Substantia nigra
nTPM: 68.8
2583 Male, age 75, right hemisphere 76.9
1916 Female, age 42, unknown 76.5
2665 Male, age 74, both hemispheres 76.0
1941 Male, age 53, unknown 70.6
1851 Male, age 51, unknown 70.0
2699 Male, age 18, unknown 68.2
1889 Female, age 72, unknown 65.6
2590 Female, age 75, unknown 65.5
2409 Female, age 72, unknown 60.8
2241 Male, age 72, unknown 57.8
Superior colliculus
nTPM: 66.8
2664 Male, age 75, both hemispheres 76.8
2668 Female, age 75, unknown 72.7
1796 Male, age 53, unknown 70.3
1839 Male, age 51, unknown 66.2
2587 Male, age 74, left hemisphere 65.2
2087 Female, age 72, unknown 64.7
1913 Female, age 42, unknown 64.5
2261 Male, age 18, unknown 64.0
1995 Male, age 72, unknown 62.7
1895 Male, age 76, right hemisphere 61.2
Ventral tegmental area
nTPM: 68.0
2218 Male, age 76, both hemispheres 70.7
1915 Female, age 42, unknown 70.1
2410 Female, age 72, unknown 68.0
1942 Male, age 51, unknown 67.7
2223 Female, age 72, unknown 66.1
2021 Male, age 53, unknown 65.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 161.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 161.3
Samples: 139

Max nTPM: 365.3
Min nTPM: 71.1
Std nTPM: 40.5
Median nTPM: 155.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 365.3
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 285.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 276.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 256.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 246.7
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 233.0
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 232.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 229.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 226.4
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 222.9
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 218.4
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 45.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 45.5
FF:10158-103A5 76 years, female 45.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 64.0
Pig sample Sample description nTPM
Midbrain
nTPM: 64.1
Samples: 4

Max nTPM: 74.4
Min nTPM: 52.5
Sample A Female 74.4
Sample B Female 52.5
Sample C Male 70.5
Sample D Male 58.8
Periaqueductal gray
nTPM: 49.1
Samples: 3

Max nTPM: 51.1
Min nTPM: 46.7
Sample B Female 51.1
Sample C Male 49.4
Sample D Male 46.7
Substantia nigra
nTPM: 60.1
Samples: 4

Max nTPM: 79.0
Min nTPM: 51.8
Sample A Female 79.0
Sample B Female 56.0
Sample C Male 53.5
Sample D Male 51.8
Superior colliculi
nTPM: 57.6
Samples: 4

Max nTPM: 75.3
Min nTPM: 48.2
Sample A Female 75.3
Sample B Female 48.2
Sample C Male 51.6
Sample D Male 55.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 92.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 92.4
Samples: 4

Max nTPM: 104.7
Min nTPM: 83.1
Sample A Male 104.7
Sample B Male 83.5
Sample C Female 83.1
Sample D Female 98.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.1
69528100 Antisense, RP_050421_03_B03, Mouse strain C57BL/6J (56 days, male) 2.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.