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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:65.5 nTPM
HPA:65.5 nTPM
GTEx:145.6 nTPM
FANTOM5:28.8 Scaled Tags Per Million
Pig:57.5 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 65.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 65.5
2565 Male, age 75, midline 73.6
2194 Female, age 79, both hemispheres 67.0
2816 Male, age 47, midline 65.2
1981 Female, age 72, midline 62.0
2048 Male, age 55, midline 59.8
Cervical spinal cord, dorsal horn
nTPM: 60.9
2296 Male, age 66, both hemispheres 63.8
2173 Female, age 72, unknown 63.0
2297 Male, age 75, both hemispheres 62.1
1877 Male, age 55, unknown 59.7
2721 Male, age 90, both hemispheres 59.6
2069 Male, age 47, both hemispheres 57.2
Cervical spinal cord, ventral horn
nTPM: 65.5
2480 Male, age 75, both hemispheres 71.2
2809 Male, age 90, both hemispheres 68.1
2820 Female, age 79, both hemispheres 66.7
2068 Male, age 55, unknown 64.9
2295 Male, age 66, both hemispheres 64.4
2098 Female, age 72, unknown 57.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 145.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 145.6
Samples: 159

Max nTPM: 239.4
Min nTPM: 67.4
Std nTPM: 34.2
Median nTPM: 144.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 239.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 234.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 226.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 226.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 212.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 211.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 209.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 201.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 201.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 201.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 199.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 198.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 195.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 195.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 194.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 192.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 192.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 192.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 190.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 190.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 189.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 189.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 189.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 186.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 185.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 183.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 182.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 182.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 182.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 179.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 178.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 178.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 175.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 175.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 174.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 172.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 172.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 170.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 169.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 168.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 167.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 165.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 165.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 164.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 164.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 162.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 162.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 160.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 160.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 159.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 158.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 157.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 155.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 155.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 154.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 153.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 152.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 152.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 151.8
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 151.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 150.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 150.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 150.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 150.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 150.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 150.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 149.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 148.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 147.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 147.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 147.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 147.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 146.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 146.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 146.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 146.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 146.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 146.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 144.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 144.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 143.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 142.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 141.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 140.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 140.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 139.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 139.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 138.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 138.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 136.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 136.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 135.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 135.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 135.0
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 134.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 134.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 134.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 134.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 133.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 133.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 132.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 131.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 131.3
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 129.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 129.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 129.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 128.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 128.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 127.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 127.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 126.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 126.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 125.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 124.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 124.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 123.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 123.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 120.6
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 119.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 119.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 119.1
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 118.4
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 117.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 117.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 116.7
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 116.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 115.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 115.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 114.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 114.7
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 114.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 113.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 113.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 112.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 111.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 110.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 109.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 109.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 106.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 106.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 105.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 103.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 102.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 102.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 101.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 101.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 98.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 98.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 97.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 94.5
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 94.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 92.7
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 91.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 89.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 88.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 87.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 84.5
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 79.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 67.4
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 28.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 28.8
FF:10181-103D1 60 years, female 34.9
FF:10159-103A6 76 years, female 22.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 57.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 52.3
Samples: 4

Max nTPM: 60.0
Min nTPM: 46.1
Sample A Female 54.0
Sample B Female 46.1
Sample C Male 48.9
Sample D Male 60.0
Ventral spinal cord
nTPM: 57.5
Samples: 4

Max nTPM: 63.7
Min nTPM: 49.4
Sample A Female 57.7
Sample B Female 59.2
Sample C Male 49.4
Sample D Male 63.7

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