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A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.
Protein expressioni
On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM
65043.0
Sample id
Sample description
nTPM
Hippocampus nTPM: 61434.1
2529
Female, age 94, left hemisphere
69328.8
2621
Female, age 67, right hemisphere
68225.6
1855
Male, age 76, left hemisphere
61856.7
2148
Female, age 91, left hemisphere
60084.3
1911
Female, age 85, right hemisphere
56839.3
1898
Male, age 80, left hemisphere
52270.0
Dentate gyrus nTPM: 65043.0
2530
Female, age 94, left hemisphere
80433.3
2531
Female, age 67, both hemispheres
77525.7
2246
Female, age 85, both hemispheres
70995.4
2528
Male, age 74, both hemispheres
55449.9
2010
Male, age 76, both hemispheres
54396.3
1927
Female, age 91, both hemispheres
51457.6
Entorhinal gyrus nTPM: 57808.2
2686
Male, age 75, right hemisphere
63779.4
2613
Female, age 94, left hemisphere
62447.2
2117
Female, age 91, right hemisphere
57604.4
1938
Female, age 85, left hemisphere
55340.8
2764
Male, age 80, right hemisphere
54350.2
1787
Male, age 76, left hemisphere
53326.9
Hippocampus, CA1 nTPM: 57248.3
2527
Male, age 74, both hemispheres
65608.0
2749
Male, age 80, left hemisphere
56837.5
2045
Male, age 76, both hemispheres
56617.2
1873
Female, age 85, both hemispheres
55414.7
2082
Female, age 91, right hemisphere
51764.1
Hippocampus, CA2 nTPM: 56957.2
2437
Female, age 94, left hemisphere
70602.1
1892
Male, age 76, both hemispheres
56293.0
2113
Female, age 91, right hemisphere
56272.9
1940
Female, age 85, left hemisphere
55096.7
2249
Male, age 74, both hemispheres
53236.2
1963
Male, age 80, left hemisphere
50242.5
Hippocampus, CA3 nTPM: 60867.5
2861
Female, age 67, both hemispheres
82877.2
2620
Female, age 94, left hemisphere
59143.4
2137
Male, age 80, left hemisphere
58370.7
2436
Male, age 74, both hemispheres
57615.6
1867
Male, age 76, both hemispheres
54518.8
1891
Female, age 85, both hemispheres
52679.6
Parahippocampal cortex nTPM: 61663.5
2245
Female, age 91, both hemispheres
83016.0
2532
Female, age 72, left hemisphere
70888.3
2622
Female, age 67, right hemisphere
64517.0
2692
Male, age 74, both hemispheres
63231.4
2250
Female, age 67, right hemisphere
61667.5
2693
Female, age 94, both hemispheres
56803.1
2018
Male, age 76, both hemispheres
56513.8
1933
Female, age 85, both hemispheres
55461.8
1990
Female, age 91, right hemisphere
52655.8
1850
Male, age 80, both hemispheres
51879.9
Perirhinal gyrus nTPM: 52801.5
2848
Male, age 76, right hemisphere
58781.6
2521
Female, age 94, right hemisphere
54355.8
1841
Female, age 85, right hemisphere
51248.1
1794
Male, age 80, right hemisphere
50409.8
1847
Female, age 91, left hemisphere
49212.1
Subiculum nTPM: 59400.6
2438
Female, age 94, left hemisphere
76659.3
2619
Male, age 74, both hemispheres
60169.5
2042
Male, age 76, both hemispheres
57029.1
1901
Male, age 80, both hemispheres
55994.2
1977
Female, age 85, both hemispheres
54332.7
2729
Female, age 91, right hemisphere
52218.6
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
