MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:85769.3 nTPM
HPA:85769.3 nTPM
GTEx:125879.0 nTPM
Pig:20302.7 nTPM
Mouse:7586.3 nTPM

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 85769.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 65467.4
2219 Male, age 76, both hemispheres 98801.0
1833 Male, age 53, unknown 68377.8
2666 Male, age 74, left hemisphere 66593.4
1830 Male, age 51, unknown 66358.3
2828 Female, age 72, unknown 63262.1
2586 Male, age 75, left hemisphere 62635.0
1870 Female, age 42, unknown 58462.6
1827 Male, age 72, unknown 58233.5
2019 Male, age 18, unknown 56342.8
2411 Female, age 72, unknown 55606.9
Dorsal raphe nucleus
nTPM: 55771.1
1828 Male, age 53, unknown 63100.9
2750 Male, age 76, both hemispheres 59111.0
2047 Male, age 72, unknown 53357.1
2016 Female, age 72, unknown 53255.7
2298 Female, age 72, unknown 50030.6
Inferior colliculus
nTPM: 62030.1
2849 Male, age 72, unknown 82358.5
1890 Male, age 53, unknown 57878.8
1848 Female, age 42, unknown 55431.4
2097 Female, age 72, unknown 52451.7
Median raphe nucleus
nTPM: 85769.3
2220 Male, age 76, midline 85769.3
Pedunculopontine tegmental nucleus
nTPM: 68352.7
2334 Male, age 80, both hemispheres 76959.4
2338 Male, age 61, both hemispheres 73384.2
1921 Female, age 85, both hemispheres 54714.6
Periaquaductal grey, anterior
nTPM: 57959.7
2502 Female, age 75, unknown 64347.2
1795 Male, age 51, unknown 55429.5
1947 Male, age 18, unknown 54102.4
Periaquaductal grey, dorsal
nTPM: 64248.3
2850 Male, age 76, both hemispheres 82849.4
2464 Female, age 72, unknown 62423.2
1831 Male, age 72, unknown 59256.5
1840 Male, age 53, unknown 52464.1
Periaquaductal grey, lateral
nTPM: 55558.7
2140 Male, age 76, both hemispheres 58601.2
2053 Male, age 18, unknown 54185.7
2272 Male, age 74, both hemispheres 53889.1
Pretectal area
nTPM: 60365.4
1815 Male, age 53, unknown 67815.3
1816 Male, age 51, unknown 67662.2
1817 Female, age 42, unknown 66370.7
2667 Female, age 75, unknown 64972.6
1944 Female, age 72, unknown 62732.2
2825 Male, age 18, unknown 62532.0
2007 Male, age 72, unknown 56779.8
2407 Male, age 75, both hemispheres 55860.6
2224 Female, age 72, unknown 55378.0
2273 Male, age 74, both hemispheres 52064.4
2316 Male, age 76, right hemisphere 51851.3
Red nucleus
nTPM: 61682.3
2503 Female, age 72, unknown 70345.7
1954 Female, age 42, unknown 65091.8
2823 Male, age 76, right hemisphere 64406.1
2227 Male, age 72, unknown 63119.3
2588 Male, age 74, left hemisphere 61359.6
2785 Male, age 18, unknown 61237.6
2769 Male, age 72, unknown 59905.3
2725 Female, age 75, unknown 59668.9
1865 Male, age 51, unknown 59465.4
1904 Male, age 53, unknown 59439.2
2584 Male, age 75, left hemisphere 59216.3
1821 Female, age 72, unknown 56932.8
Substantia nigra
nTPM: 63122.8
2699 Male, age 18, unknown 80550.2
2665 Male, age 74, both hemispheres 76025.6
1916 Female, age 42, unknown 65983.1
1941 Male, age 53, unknown 65918.5
2409 Female, age 72, unknown 61767.7
2241 Male, age 72, unknown 58753.5
2583 Male, age 75, right hemisphere 56313.2
1889 Female, age 72, unknown 55954.9
1851 Male, age 51, unknown 55400.9
2590 Female, age 75, unknown 54560.5
Superior colliculus
nTPM: 58614.4
2664 Male, age 75, both hemispheres 61677.6
2087 Female, age 72, unknown 61626.4
1839 Male, age 51, unknown 61324.1
1913 Female, age 42, unknown 60428.3
1995 Male, age 72, unknown 57639.0
2587 Male, age 74, left hemisphere 57575.0
1895 Male, age 76, right hemisphere 57317.0
2261 Male, age 18, unknown 57291.6
2668 Female, age 75, unknown 56381.2
1796 Male, age 53, unknown 54883.9
Ventral tegmental area
nTPM: 64941.9
2218 Male, age 76, both hemispheres 82946.0
2223 Female, age 72, unknown 71446.3
1942 Male, age 51, unknown 61328.4
1915 Female, age 42, unknown 58252.4
2021 Male, age 53, unknown 58054.7
2410 Female, age 72, unknown 57623.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 125879.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 125879.0
Samples: 139

Max nTPM: 446937.0
Min nTPM: 21082.0
Std nTPM: 83185.2
Median nTPM: 101775.4
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 446937.0
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 410072.5
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 405248.5
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 373563.0
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 349592.0
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 334526.7
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 329128.6
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 296816.9
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 293294.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 261202.2
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 257441.6
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MIDBRAIN - Pig RNA-seqi
Average nTPM 20302.7
Pig sample Sample description nTPM
Midbrain
nTPM: 20302.7
Samples: 4

Max nTPM: 32750.2
Min nTPM: 9341.6
Sample A Female 17446.3
Sample B Female 32750.2
Sample C Male 21672.7
Sample D Male 9341.6
Periaqueductal gray
nTPM: 13859.0
Samples: 3

Max nTPM: 16161.2
Min nTPM: 9951.2
Sample B Female 15464.6
Sample C Male 16161.2
Sample D Male 9951.2
Substantia nigra
nTPM: 16911.1
Samples: 4

Max nTPM: 26066.8
Min nTPM: 7595.8
Sample A Female 26066.8
Sample B Female 15067.4
Sample C Male 18914.3
Sample D Male 7595.8
Superior colliculi
nTPM: 14535.8
Samples: 4

Max nTPM: 25215.6
Min nTPM: 1599.8
Sample A Female 25215.6
Sample B Female 1599.8
Sample C Male 17731.7
Sample D Male 13595.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 7586.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 7586.4
Samples: 4

Max nTPM: 10888.4
Min nTPM: 5023.9
Sample A Male 10888.4
Sample B Male 8540.4
Sample C Female 5892.7
Sample D Female 5023.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.