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BRAIN HIPPOCAMPUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
HIPPOCAMPUS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:356.9 nTPM
GTEx:171.4 nTPM
FANTOM5:313.4 Scaled Tags Per Million

HIPPOCAMPUS - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPUS - HPA Brain RNA-seq
Avg nTPM 356.9
Sample id Sample description nTPM
Hippocampus
nTPM: 356.9
2529 Female, age 94, left hemisphere 364.5
1855 Male, age 76, left hemisphere 361.2
1898 Male, age 80, left hemisphere 361.1
2621 Female, age 67, right hemisphere 353.2
1911 Female, age 85, right hemisphere 351.6
2148 Female, age 91, left hemisphere 349.7

HIPPOCAMPUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 171.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 171.4
Samples: 197

Max nTPM: 349.4
Min nTPM: 100.9
Std nTPM: 42.7
Median nTPM: 162.6
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 349.4
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 321.2
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 308.7
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 296.9
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 293.9
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 290.8
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 287.6
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 281.5
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 257.0
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 255.5
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 246.6
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 244.3
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 243.1
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 235.7
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 234.5
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 231.1
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 229.8
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 228.3
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 228.1
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 226.3
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 221.6
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 218.0
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 216.8
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 215.4
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 214.9
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 214.0
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 213.4
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 213.3
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 212.7
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 212.5
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 212.3
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 211.6
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 210.6
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 210.0
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 209.2
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 208.4
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 205.9
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 204.2
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 203.1
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 202.9
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 201.6
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 200.1
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 200.0
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 197.8
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 197.0
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 196.7
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 196.7
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 196.3
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 195.4
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 193.3
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 192.7
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 191.8
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 189.9
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 189.3
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 188.5
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 187.7
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 186.1
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 185.9
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 184.5
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 181.9
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 181.7
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 181.3
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 181.1
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 179.7
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 179.5
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 179.2
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 178.2
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 177.9
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 177.5
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 177.5
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 177.4
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 176.6
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 176.2
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 175.3
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 174.9
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 174.9
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 174.6
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 172.7
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 172.2
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 171.6
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 171.1
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 170.9
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 170.2
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 167.6
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 167.6
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 167.5
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 167.3
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 166.0
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 165.9
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 165.8
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 165.7
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 165.6
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 165.4
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 165.4
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 164.7
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 164.4
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 164.1
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 162.8
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 162.6
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 160.7
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 160.3
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 159.9
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 159.3
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 159.1
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 158.9
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 158.7
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 158.6
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 158.6
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 158.6
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 157.6
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 156.9
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 156.8
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 156.5
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 155.1
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 154.3
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 153.7
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 153.0
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 152.9
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 151.5
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 151.1
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 151.1
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 150.5
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 150.5
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 149.9
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 149.8
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 149.4
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 149.0
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 148.0
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 147.8
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 147.7
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 147.6
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 147.3
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 147.2
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 147.1
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 146.9
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 146.7
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 146.1
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 145.8
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 145.4
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 144.9
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 144.6
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 144.5
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 144.5
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 144.1
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 143.3
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 142.9
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 142.8
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 142.7
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 142.3
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 142.3
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 142.1
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 141.6
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 140.0
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 139.6
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 139.4
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 139.2
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 137.6
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 137.5
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 137.1
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 137.0
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 137.0
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 136.9
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 135.7
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 135.4
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 135.1
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 134.1
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 134.0
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 133.9
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 133.5
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 133.5
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 133.4
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 132.7
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 132.1
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 131.4
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 129.6
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 129.5
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 128.9
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 128.1
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 126.5
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 126.0
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 125.8
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 125.5
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 125.0
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 124.7
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 122.6
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 121.2
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 118.6
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 117.5
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 117.5
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 117.5
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 111.4
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 111.0
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 109.6
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 108.8
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 108.6
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 102.0
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 100.9
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HIPPOCAMPUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 313.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 313.4
FF:10169-103B7 60 years, female 354.7
FF:10153-102I9 76 years, female 272.2

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