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RPS28
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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:129.8 nTPM
HPA:129.8 nTPM
GTEx:200.0 nTPM
FANTOM5:7.7 Scaled Tags Per Million
Pig:395.3 nTPM
Mouse:672.1 nTPM
Allen mouse:6.7 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 129.8
Sample id Sample description nTPM
Amygdala
nTPM: 128.7
2695 Female, age 67, right hemisphere 132.7
2514 Male, age 75, right hemisphere 129.8
2814 Male, age 76, right hemisphere 127.8
1987 Female, age 91, left hemisphere 127.2
2517 Female, age 94, left hemisphere 125.9
Basal amygdala
nTPM: 125.8
2609 Male, age 75, right hemisphere 133.1
2827 Female, age 67, right hemisphere 132.4
2110 Male, age 80, left hemisphere 124.5
2685 Female, age 94, left hemisphere 124.0
2243 Female, age 91, right hemisphere 121.7
1955 Male, age 76, both hemispheres 119.1
Central amygdala
nTPM: 128.6
2826 Female, age 94, left hemisphere 141.0
2515 Male, age 75, right hemisphere 131.7
2239 Male, age 80, left hemisphere 124.3
1905 Male, age 76, both hemispheres 124.2
2701 Female, age 91, right hemisphere 121.8
Corticomedial amygdala
nTPM: 123.1
2428 Male, age 75, right hemisphere 129.8
2535 Female, age 67, right hemisphere 126.0
2829 Male, age 80, left hemisphere 123.6
2429 Female, age 94, left hemisphere 121.9
2242 Female, age 91, right hemisphere 119.9
2240 Male, age 76, both hemispheres 117.4
Lateral amygdala
nTPM: 129.8
2830 Female, age 67, right hemisphere 140.7
2516 Male, age 75, right hemisphere 137.1
2534 Female, age 94, left hemisphere 132.7
2256 Male, age 80, left hemisphere 125.2
2255 Female, age 91, right hemisphere 121.9
1883 Male, age 76, both hemispheres 121.4
Stria terminalis, bed nucleus
nTPM: 121.0
1974 Female, age 91, both hemispheres 122.8
2201 Male, age 74, unknown 121.9
2486 Female, age 94, both hemispheres 118.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 200.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 200.0
Samples: 152

Max nTPM: 598.6
Min nTPM: 68.3
Std nTPM: 93.2
Median nTPM: 178.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 598.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 504.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 480.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 469.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 464.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 428.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 410.6
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 399.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 397.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 373.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 351.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 349.5
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 346.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 338.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 327.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 324.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 311.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 308.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 304.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 302.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 286.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 282.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 280.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 276.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 270.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 270.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 270.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 268.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 265.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 265.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 261.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 259.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 250.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 249.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 247.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 246.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 243.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 242.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 233.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 231.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 225.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 224.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 221.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 219.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 216.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 216.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 215.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 215.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 214.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 212.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 209.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 208.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 208.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 207.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 206.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 206.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 204.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 204.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 201.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 198.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 196.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 196.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 195.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 193.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 193.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 192.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 191.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 189.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 189.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 189.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 189.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 184.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 183.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 181.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 181.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 179.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 178.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 177.5
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 177.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 176.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 176.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 175.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 172.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 171.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 169.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 167.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 166.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 166.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 163.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 163.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 161.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 161.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 159.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 157.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 157.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 154.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 154.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 151.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 150.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 149.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 149.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 149.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 149.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 145.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 145.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 143.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 142.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 140.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 138.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 136.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 133.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 133.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 132.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 131.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 131.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 131.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 130.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 130.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 130.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 129.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 128.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 127.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 127.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 125.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 124.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 123.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 123.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 122.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 121.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 121.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 120.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 118.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 115.5
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 113.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 113.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 111.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 109.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 109.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 106.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 106.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 106.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 106.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 104.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 96.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 92.5
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 89.8
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 85.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 83.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 76.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 75.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 72.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 68.3
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 7.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 7.7
FF:10151-102I7 76 years, female 7.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 395.3
Pig sample Sample description nTPM
Amygdala
nTPM: 395.3
Samples: 4

Max nTPM: 499.2
Min nTPM: 251.5
Sample A Female 499.2
Sample B Female 444.1
Sample C Male 386.5
Sample D Male 251.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 672.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 672.1
Samples: 4

Max nTPM: 746.3
Min nTPM: 624.8
Sample A Male 624.8
Sample B Male 670.3
Sample C Female 746.3
Sample D Female 647.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 6.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 6.7
69112407 Antisense, RP_050324_02_G08, Mouse strain C57BL/6J (56 days, male) 6.7

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