MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:10.4 nTPM
HPA:10.4 nTPM
GTEx:274.5 nTPM
FANTOM5:300.2 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 10.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 4.4
1827 Male, age 72, unknown 5.2
1830 Male, age 51, unknown 5.1
1870 Female, age 42, unknown 5.1
2019 Male, age 18, unknown 4.9
2666 Male, age 74, left hemisphere 4.7
2411 Female, age 72, unknown 4.5
2828 Female, age 72, unknown 4.5
2586 Male, age 75, left hemisphere 3.8
1833 Male, age 53, unknown 3.6
2219 Male, age 76, both hemispheres 2.7
Dorsal raphe nucleus
nTPM: 5.6
2016 Female, age 72, unknown 7.2
2298 Female, age 72, unknown 6.1
2047 Male, age 72, unknown 5.1
1828 Male, age 53, unknown 5.0
2750 Male, age 76, both hemispheres 4.5
Inferior colliculus
nTPM: 4.9
2849 Male, age 72, unknown 5.7
2097 Female, age 72, unknown 5.5
1848 Female, age 42, unknown 4.6
1890 Male, age 53, unknown 3.7
Median raphe nucleus
nTPM: 4.3
2220 Male, age 76, midline 4.3
Pedunculopontine tegmental nucleus
nTPM: 6.1
2334 Male, age 80, both hemispheres 8.4
2338 Male, age 61, both hemispheres 5.9
1921 Female, age 85, both hemispheres 4.0
Periaquaductal grey, anterior
nTPM: 4.8
2502 Female, age 75, unknown 5.7
1795 Male, age 51, unknown 4.5
1947 Male, age 18, unknown 4.1
Periaquaductal grey, dorsal
nTPM: 4.2
1831 Male, age 72, unknown 5.0
2464 Female, age 72, unknown 4.7
2850 Male, age 76, both hemispheres 4.2
1840 Male, age 53, unknown 2.9
Periaquaductal grey, lateral
nTPM: 4.9
2272 Male, age 74, both hemispheres 5.6
2053 Male, age 18, unknown 4.8
2140 Male, age 76, both hemispheres 4.2
Pretectal area
nTPM: 4.3
1817 Female, age 42, unknown 5.5
2007 Male, age 72, unknown 5.5
2224 Female, age 72, unknown 4.8
2407 Male, age 75, both hemispheres 4.8
1944 Female, age 72, unknown 4.7
2316 Male, age 76, right hemisphere 4.5
2825 Male, age 18, unknown 4.1
2273 Male, age 74, both hemispheres 4.0
1816 Male, age 51, unknown 3.8
1815 Male, age 53, unknown 2.9
2667 Female, age 75, unknown 2.6
Red nucleus
nTPM: 5.3
1954 Female, age 42, unknown 6.7
2503 Female, age 72, unknown 6.4
1865 Male, age 51, unknown 6.1
2227 Male, age 72, unknown 5.7
2588 Male, age 74, left hemisphere 5.6
1821 Female, age 72, unknown 5.4
2785 Male, age 18, unknown 5.3
2725 Female, age 75, unknown 5.0
2823 Male, age 76, right hemisphere 5.0
2584 Male, age 75, left hemisphere 4.3
2769 Male, age 72, unknown 4.3
1904 Male, age 53, unknown 4.1
Substantia nigra
nTPM: 5.0
2665 Male, age 74, both hemispheres 6.9
1851 Male, age 51, unknown 5.8
2699 Male, age 18, unknown 5.6
2409 Female, age 72, unknown 5.4
1916 Female, age 42, unknown 4.9
2583 Male, age 75, right hemisphere 4.9
2590 Female, age 75, unknown 4.8
1889 Female, age 72, unknown 4.7
1941 Male, age 53, unknown 3.9
2241 Male, age 72, unknown 3.0
Superior colliculus
nTPM: 4.8
2668 Female, age 75, unknown 7.2
1796 Male, age 53, unknown 6.1
1913 Female, age 42, unknown 5.5
2587 Male, age 74, left hemisphere 5.1
1839 Male, age 51, unknown 4.3
1895 Male, age 76, right hemisphere 4.1
1995 Male, age 72, unknown 4.1
2261 Male, age 18, unknown 4.1
2664 Male, age 75, both hemispheres 4.0
2087 Female, age 72, unknown 3.7
Ventral tegmental area
nTPM: 10.4
2021 Male, age 53, unknown 37.1
2410 Female, age 72, unknown 5.6
1915 Female, age 42, unknown 5.4
1942 Male, age 51, unknown 5.3
2218 Male, age 76, both hemispheres 4.9
2223 Female, age 72, unknown 4.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 274.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 274.5
Samples: 139

Max nTPM: 729.8
Min nTPM: 104.2
Std nTPM: 108.5
Median nTPM: 250.1
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 729.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 606.5
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 595.5
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 590.0
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 587.9
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 496.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 466.7
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 452.1
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 447.2
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 428.3
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 427.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 300.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 300.2
FF:10158-103A5 76 years, female 300.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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