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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:7.7 nTPM
HPA:7.7 nTPM
GTEx:314.7 nTPM
FANTOM5:343.1 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 7.7
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 6.1
1981 Female, age 72, midline 7.5
2194 Female, age 79, both hemispheres 6.3
2816 Male, age 47, midline 5.9
2048 Male, age 55, midline 5.6
2565 Male, age 75, midline 5.3
Cervical spinal cord, dorsal horn
nTPM: 6.7
2297 Male, age 75, both hemispheres 10.4
1877 Male, age 55, unknown 6.9
2173 Female, age 72, unknown 6.1
2069 Male, age 47, both hemispheres 5.9
2721 Male, age 90, both hemispheres 5.6
2296 Male, age 66, both hemispheres 5.3
Cervical spinal cord, ventral horn
nTPM: 7.7
2098 Female, age 72, unknown 13.5
2809 Male, age 90, both hemispheres 8.5
2295 Male, age 66, both hemispheres 8.0
2480 Male, age 75, both hemispheres 6.4
2068 Male, age 55, unknown 5.1
2820 Female, age 79, both hemispheres 4.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 314.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 314.7
Samples: 159

Max nTPM: 1159.2
Min nTPM: 104.0
Std nTPM: 144.9
Median nTPM: 291.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 1159.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 857.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 707.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 697.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 610.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 581.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 576.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 573.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 571.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 552.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 550.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 531.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 515.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 507.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 505.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 494.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 491.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 480.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 478.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 477.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 475.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 475.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 461.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 441.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 424.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 417.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 416.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 414.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 409.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 408.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 407.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 400.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 398.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 393.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 392.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 390.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 383.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 383.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 381.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 378.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 374.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 368.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 363.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 359.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 357.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 357.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 354.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 352.7
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 350.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 349.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 347.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 346.6
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 344.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 334.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 333.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 331.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 330.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 330.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 330.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 330.2
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 326.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 325.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 324.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 321.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 320.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 317.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 314.1
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 313.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 313.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 305.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 302.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 302.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 301.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 300.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 299.6
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 299.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 296.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 296.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 293.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 291.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 291.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 290.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 290.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 286.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 280.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 279.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 278.1
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 275.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 271.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 268.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 266.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 266.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 266.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 265.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 265.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 262.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 259.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 257.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 256.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 251.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 250.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 248.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 248.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 247.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 242.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 242.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 240.6
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 235.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 233.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 229.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 227.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 227.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 227.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 226.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 226.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 226.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 224.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 224.1
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 223.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 218.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 215.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 213.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 203.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 201.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 201.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 200.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 199.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 199.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 195.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 194.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 193.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 193.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 185.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 184.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 182.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 180.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 178.6
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 178.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 177.7
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 177.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 175.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 172.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 171.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 170.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 164.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 161.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 161.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 156.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 153.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 150.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 147.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 146.3
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 146.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 141.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 131.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 123.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 107.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 104.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 104.0
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 343.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 343.1
FF:10159-103A6 76 years, female 348.3
FF:10181-103D1 60 years, female 338.0

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