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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:248.0 nTPM
HPA:248.0 nTPM
GTEx:356.9 nTPM
FANTOM5:292.9 Scaled Tags Per Million
Mouse:53.4 nTPM
Allen mouse:12.8 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 248.0
Sample id Sample description nTPM
Amygdala
nTPM: 248.0
2695 Female, age 67, right hemisphere 298.5
2514 Male, age 75, right hemisphere 247.5
2517 Female, age 94, left hemisphere 238.1
2814 Male, age 76, right hemisphere 228.7
1987 Female, age 91, left hemisphere 227.4
Basal amygdala
nTPM: 240.6
2609 Male, age 75, right hemisphere 295.8
2243 Female, age 91, right hemisphere 253.9
2827 Female, age 67, right hemisphere 232.0
1955 Male, age 76, both hemispheres 223.2
2110 Male, age 80, left hemisphere 221.7
2685 Female, age 94, left hemisphere 217.2
Central amygdala
nTPM: 243.9
2515 Male, age 75, right hemisphere 269.4
2239 Male, age 80, left hemisphere 245.2
2826 Female, age 94, left hemisphere 243.1
2701 Female, age 91, right hemisphere 238.5
1905 Male, age 76, both hemispheres 223.2
Corticomedial amygdala
nTPM: 239.7
2428 Male, age 75, right hemisphere 263.7
2829 Male, age 80, left hemisphere 251.4
2242 Female, age 91, right hemisphere 245.5
2535 Female, age 67, right hemisphere 232.5
2429 Female, age 94, left hemisphere 227.6
2240 Male, age 76, both hemispheres 217.6
Lateral amygdala
nTPM: 243.7
2516 Male, age 75, right hemisphere 284.2
2256 Male, age 80, left hemisphere 255.1
2830 Female, age 67, right hemisphere 235.3
2255 Female, age 91, right hemisphere 235.2
2534 Female, age 94, left hemisphere 232.1
1883 Male, age 76, both hemispheres 220.4
Stria terminalis, bed nucleus
nTPM: 206.1
2201 Male, age 74, unknown 215.7
2486 Female, age 94, both hemispheres 201.3
1974 Female, age 91, both hemispheres 201.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 356.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 356.9
Samples: 152

Max nTPM: 742.3
Min nTPM: 60.8
Std nTPM: 112.2
Median nTPM: 349.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 742.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 720.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 701.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 626.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 620.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 578.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 572.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 571.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 555.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 550.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 546.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 532.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 525.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 510.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 503.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 498.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 477.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 474.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 468.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 466.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 461.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 460.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 457.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 454.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 446.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 445.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 440.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 435.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 434.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 431.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 429.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 429.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 428.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 426.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 418.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 414.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 413.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 409.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 409.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 405.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 403.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 400.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 398.1
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 395.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 394.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 394.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 393.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 391.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 387.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 387.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 386.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 385.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 385.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 385.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 384.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 384.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 382.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 377.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 377.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 375.4
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 373.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 372.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 367.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 366.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 365.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 362.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 362.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 361.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 360.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 358.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 358.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 356.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 355.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 354.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 353.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 350.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 347.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 346.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 345.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 344.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 344.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 342.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 342.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 340.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 340.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 339.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 336.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 334.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 332.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 332.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 331.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 330.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 327.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 327.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 326.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 324.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 322.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 322.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 320.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 315.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 314.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 312.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 309.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 308.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 304.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 301.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 299.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 295.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 293.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 292.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 290.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 285.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 281.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 277.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 276.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 276.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 275.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 274.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 273.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 273.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 273.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 271.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 268.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 265.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 264.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 261.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 260.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 255.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 253.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 252.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 251.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 250.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 247.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 239.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 238.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 223.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 222.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 221.1
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 216.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 205.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 204.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 202.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 202.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 200.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 195.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 195.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 191.4
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 174.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 173.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 117.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 116.4
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 60.8
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 292.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 292.9
FF:10151-102I7 76 years, female 292.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 53.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 53.4
Samples: 4

Max nTPM: 60.1
Min nTPM: 48.9
Sample A Male 53.3
Sample B Male 48.9
Sample C Female 60.1
Sample D Female 51.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 12.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 12.8
771 Antisense, RP_Baylor_103306, Mouse strain C57BL/6J (56 days, male) 23.6
770 Antisense, RP_Baylor_103306, Mouse strain C57BL/6J (56 days, male) 15.3
70784952 Antisense, RP_050706_01_E08, Mouse strain C57BL/6J (56 days, male) 1.9

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