MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:241.0 nTPM
HPA:241.0 nTPM
GTEx:238.6 nTPM
FANTOM5:180.2 Scaled Tags Per Million
Mouse:32.0 nTPM
Allen mouse:7.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 241.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 235.6
2586 Male, age 75, left hemisphere 296.6
2828 Female, age 72, unknown 279.6
2219 Male, age 76, both hemispheres 254.8
2666 Male, age 74, left hemisphere 252.0
1827 Male, age 72, unknown 227.6
1870 Female, age 42, unknown 225.8
1833 Male, age 53, unknown 213.3
1830 Male, age 51, unknown 210.4
2411 Female, age 72, unknown 207.0
2019 Male, age 18, unknown 188.5
Dorsal raphe nucleus
nTPM: 219.9
2016 Female, age 72, unknown 234.1
2047 Male, age 72, unknown 232.4
1828 Male, age 53, unknown 225.3
2298 Female, age 72, unknown 207.7
2750 Male, age 76, both hemispheres 199.9
Inferior colliculus
nTPM: 226.7
2849 Male, age 72, unknown 237.4
1848 Female, age 42, unknown 235.7
1890 Male, age 53, unknown 230.2
2097 Female, age 72, unknown 203.7
Median raphe nucleus
nTPM: 210.7
2220 Male, age 76, midline 210.7
Pedunculopontine tegmental nucleus
nTPM: 217.1
1921 Female, age 85, both hemispheres 218.7
2334 Male, age 80, both hemispheres 217.3
2338 Male, age 61, both hemispheres 215.4
Periaquaductal grey, anterior
nTPM: 231.0
1795 Male, age 51, unknown 235.7
1947 Male, age 18, unknown 233.6
2502 Female, age 75, unknown 223.7
Periaquaductal grey, dorsal
nTPM: 241.0
2850 Male, age 76, both hemispheres 256.5
1840 Male, age 53, unknown 250.8
1831 Male, age 72, unknown 232.1
2464 Female, age 72, unknown 224.5
Periaquaductal grey, lateral
nTPM: 219.3
2053 Male, age 18, unknown 242.9
2140 Male, age 76, both hemispheres 226.0
2272 Male, age 74, both hemispheres 188.9
Pretectal area
nTPM: 224.6
1817 Female, age 42, unknown 243.6
2825 Male, age 18, unknown 242.2
2667 Female, age 75, unknown 235.3
1815 Male, age 53, unknown 233.2
1816 Male, age 51, unknown 232.2
1944 Female, age 72, unknown 229.8
2407 Male, age 75, both hemispheres 229.0
2316 Male, age 76, right hemisphere 218.8
2224 Female, age 72, unknown 211.7
2007 Male, age 72, unknown 203.6
2273 Male, age 74, both hemispheres 190.8
Red nucleus
nTPM: 227.6
2584 Male, age 75, left hemisphere 240.9
2588 Male, age 74, left hemisphere 240.3
2725 Female, age 75, unknown 238.5
1954 Female, age 42, unknown 237.9
2503 Female, age 72, unknown 236.8
2227 Male, age 72, unknown 230.6
2769 Male, age 72, unknown 226.4
1904 Male, age 53, unknown 225.3
1821 Female, age 72, unknown 222.4
1865 Male, age 51, unknown 219.4
2823 Male, age 76, right hemisphere 214.4
2785 Male, age 18, unknown 198.1
Substantia nigra
nTPM: 232.3
2699 Male, age 18, unknown 298.2
2583 Male, age 75, right hemisphere 242.5
2665 Male, age 74, both hemispheres 241.5
1916 Female, age 42, unknown 237.4
1851 Male, age 51, unknown 235.8
1889 Female, age 72, unknown 227.4
1941 Male, age 53, unknown 215.2
2590 Female, age 75, unknown 213.8
2241 Male, age 72, unknown 213.4
2409 Female, age 72, unknown 198.2
Superior colliculus
nTPM: 231.9
2664 Male, age 75, both hemispheres 278.1
1995 Male, age 72, unknown 253.9
1913 Female, age 42, unknown 232.7
2087 Female, age 72, unknown 232.6
1796 Male, age 53, unknown 230.4
2668 Female, age 75, unknown 230.0
1839 Male, age 51, unknown 224.9
2261 Male, age 18, unknown 221.4
2587 Male, age 74, left hemisphere 213.4
1895 Male, age 76, right hemisphere 201.5
Ventral tegmental area
nTPM: 220.0
1942 Male, age 51, unknown 233.3
1915 Female, age 42, unknown 227.3
2021 Male, age 53, unknown 222.1
2223 Female, age 72, unknown 215.7
2410 Female, age 72, unknown 215.1
2218 Male, age 76, both hemispheres 206.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 238.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 238.6
Samples: 139

Max nTPM: 616.9
Min nTPM: 66.6
Std nTPM: 94.3
Median nTPM: 228.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 616.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 610.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 451.6
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 443.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 433.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 418.7
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 410.2
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 392.0
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 388.7
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 379.3
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 374.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 180.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 180.2
FF:10158-103A5 76 years, female 180.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 32.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 32.0
Samples: 4

Max nTPM: 34.6
Min nTPM: 29.8
Sample A Male 34.6
Sample B Male 30.6
Sample C Female 29.8
Sample D Female 32.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.5
771 Antisense, RP_Baylor_103306, Mouse strain C57BL/6J (56 days, male) 12.9
770 Antisense, RP_Baylor_103306, Mouse strain C57BL/6J (56 days, male) 4.1
70784952 Antisense, RP_050706_01_E08, Mouse strain C57BL/6J (56 days, male) 2.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.