MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:52.7 nTPM
HPA:52.7 nTPM
GTEx:50.5 nTPM
FANTOM5:22.9 Scaled Tags Per Million
Pig:35.2 nTPM
Mouse:32.2 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 52.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 47.7
1870 Female, age 42, unknown 50.6
1833 Male, age 53, unknown 49.0
2411 Female, age 72, unknown 49.0
2219 Male, age 76, both hemispheres 48.6
1830 Male, age 51, unknown 48.3
2586 Male, age 75, left hemisphere 47.8
1827 Male, age 72, unknown 46.9
2666 Male, age 74, left hemisphere 46.1
2828 Female, age 72, unknown 45.3
2019 Male, age 18, unknown 45.1
Dorsal raphe nucleus
nTPM: 49.3
2047 Male, age 72, unknown 50.7
2298 Female, age 72, unknown 50.0
2750 Male, age 76, both hemispheres 49.8
2016 Female, age 72, unknown 49.1
1828 Male, age 53, unknown 47.1
Inferior colliculus
nTPM: 47.0
2097 Female, age 72, unknown 48.7
1890 Male, age 53, unknown 47.9
2849 Male, age 72, unknown 45.7
1848 Female, age 42, unknown 45.5
Median raphe nucleus
nTPM: 50.1
2220 Male, age 76, midline 50.1
Pedunculopontine tegmental nucleus
nTPM: 49.4
2338 Male, age 61, both hemispheres 50.9
2334 Male, age 80, both hemispheres 49.1
1921 Female, age 85, both hemispheres 48.2
Periaquaductal grey, anterior
nTPM: 49.8
1947 Male, age 18, unknown 52.1
2502 Female, age 75, unknown 49.2
1795 Male, age 51, unknown 48.1
Periaquaductal grey, dorsal
nTPM: 48.7
1840 Male, age 53, unknown 50.1
2850 Male, age 76, both hemispheres 49.2
1831 Male, age 72, unknown 48.1
2464 Female, age 72, unknown 47.5
Periaquaductal grey, lateral
nTPM: 46.4
2053 Male, age 18, unknown 48.7
2140 Male, age 76, both hemispheres 45.7
2272 Male, age 74, both hemispheres 44.8
Pretectal area
nTPM: 47.9
2224 Female, age 72, unknown 49.9
2825 Male, age 18, unknown 49.4
1815 Male, age 53, unknown 48.4
1944 Female, age 72, unknown 48.3
2407 Male, age 75, both hemispheres 48.2
2667 Female, age 75, unknown 48.2
2316 Male, age 76, right hemisphere 47.7
2273 Male, age 74, both hemispheres 47.2
1817 Female, age 42, unknown 46.7
1816 Male, age 51, unknown 46.4
2007 Male, age 72, unknown 46.1
Red nucleus
nTPM: 47.6
1904 Male, age 53, unknown 50.5
1821 Female, age 72, unknown 49.6
1954 Female, age 42, unknown 49.0
1865 Male, age 51, unknown 48.8
2584 Male, age 75, left hemisphere 48.7
2823 Male, age 76, right hemisphere 47.5
2503 Female, age 72, unknown 47.4
2769 Male, age 72, unknown 46.9
2588 Male, age 74, left hemisphere 46.8
2227 Male, age 72, unknown 46.2
2725 Female, age 75, unknown 45.8
2785 Male, age 18, unknown 44.4
Substantia nigra
nTPM: 52.7
2241 Male, age 72, unknown 63.3
2409 Female, age 72, unknown 57.2
2699 Male, age 18, unknown 54.4
1851 Male, age 51, unknown 53.9
1916 Female, age 42, unknown 51.5
2665 Male, age 74, both hemispheres 50.7
2590 Female, age 75, unknown 50.4
2583 Male, age 75, right hemisphere 49.5
1889 Female, age 72, unknown 48.3
1941 Male, age 53, unknown 47.5
Superior colliculus
nTPM: 47.5
2668 Female, age 75, unknown 51.2
1913 Female, age 42, unknown 48.2
2587 Male, age 74, left hemisphere 47.9
2664 Male, age 75, both hemispheres 47.3
1796 Male, age 53, unknown 47.0
1895 Male, age 76, right hemisphere 47.0
1839 Male, age 51, unknown 46.9
2087 Female, age 72, unknown 46.8
2261 Male, age 18, unknown 46.6
1995 Male, age 72, unknown 46.5
Ventral tegmental area
nTPM: 50.3
1915 Female, age 42, unknown 53.1
2223 Female, age 72, unknown 51.3
1942 Male, age 51, unknown 50.6
2021 Male, age 53, unknown 49.7
2218 Male, age 76, both hemispheres 48.7
2410 Female, age 72, unknown 48.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 50.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 50.5
Samples: 139

Max nTPM: 205.8
Min nTPM: 22.4
Std nTPM: 22.5
Median nTPM: 46.2
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 205.8
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 138.2
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 133.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 123.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 103.7
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 79.3
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 78.7
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 78.5
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 78.0
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 76.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 72.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 22.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 22.9
FF:10158-103A5 76 years, female 22.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 35.2
Pig sample Sample description nTPM
Midbrain
nTPM: 30.0
Samples: 4

Max nTPM: 45.2
Min nTPM: 20.8
Sample A Female 45.2
Sample B Female 32.3
Sample C Male 20.8
Sample D Male 21.5
Periaqueductal gray
nTPM: 33.2
Samples: 3

Max nTPM: 45.2
Min nTPM: 24.1
Sample B Female 24.1
Sample C Male 45.2
Sample D Male 30.3
Substantia nigra
nTPM: 35.3
Samples: 4

Max nTPM: 40.6
Min nTPM: 30.6
Sample A Female 40.6
Sample B Female 36.8
Sample C Male 33.0
Sample D Male 30.6
Superior colliculi
nTPM: 30.0
Samples: 4

Max nTPM: 39.7
Min nTPM: 23.2
Sample A Female 31.4
Sample B Female 39.7
Sample C Male 25.6
Sample D Male 23.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 32.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 32.2
Samples: 4

Max nTPM: 41.9
Min nTPM: 27.0
Sample A Male 41.9
Sample B Male 27.0
Sample C Female 28.4
Sample D Female 31.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
71280814 Antisense, RP_050818_01_F07, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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