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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:308.0 nTPM
HPA:308.0 nTPM
GTEx:310.0 nTPM
FANTOM5:113.1 Scaled Tags Per Million
Pig:0.0 nTPM
Mouse:174.0 nTPM
Allen mouse:6.7 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 308.0
Sample id Sample description nTPM
Amygdala
nTPM: 308.0
2695 Female, age 67, right hemisphere 316.8
2814 Male, age 76, right hemisphere 311.2
2514 Male, age 75, right hemisphere 305.3
1987 Female, age 91, left hemisphere 304.5
2517 Female, age 94, left hemisphere 302.3
Basal amygdala
nTPM: 299.5
2110 Male, age 80, left hemisphere 305.5
2827 Female, age 67, right hemisphere 301.3
2609 Male, age 75, right hemisphere 301.1
2243 Female, age 91, right hemisphere 299.7
2685 Female, age 94, left hemisphere 295.3
1955 Male, age 76, both hemispheres 293.9
Central amygdala
nTPM: 303.2
2826 Female, age 94, left hemisphere 319.4
2515 Male, age 75, right hemisphere 308.0
1905 Male, age 76, both hemispheres 304.5
2239 Male, age 80, left hemisphere 293.9
2701 Female, age 91, right hemisphere 290.1
Corticomedial amygdala
nTPM: 299.2
2829 Male, age 80, left hemisphere 308.8
2428 Male, age 75, right hemisphere 303.9
2242 Female, age 91, right hemisphere 303.8
2535 Female, age 67, right hemisphere 293.4
2240 Male, age 76, both hemispheres 292.7
2429 Female, age 94, left hemisphere 292.5
Lateral amygdala
nTPM: 303.0
2534 Female, age 94, left hemisphere 311.8
2830 Female, age 67, right hemisphere 308.7
1883 Male, age 76, both hemispheres 306.8
2516 Male, age 75, right hemisphere 306.5
2256 Male, age 80, left hemisphere 294.7
2255 Female, age 91, right hemisphere 289.6
Stria terminalis, bed nucleus
nTPM: 291.6
1974 Female, age 91, both hemispheres 299.3
2201 Male, age 74, unknown 289.1
2486 Female, age 94, both hemispheres 286.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 310.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 310.0
Samples: 152

Max nTPM: 973.1
Min nTPM: 143.7
Std nTPM: 100.1
Median nTPM: 296.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 973.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 681.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 669.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 594.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 561.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 519.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 492.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 485.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 459.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 452.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 440.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 436.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 436.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 428.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 419.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 410.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 398.8
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 397.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 396.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 395.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 383.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 378.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 371.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 369.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 364.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 362.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 362.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 360.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 356.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 349.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 346.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 343.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 343.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 343.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 339.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 334.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 329.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 328.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 327.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 326.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 326.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 325.6
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 323.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 323.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 321.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 320.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 318.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 317.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 316.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 314.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 314.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 313.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 313.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 310.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 310.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 309.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 309.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 308.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 308.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 307.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 306.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 305.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 305.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 304.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 304.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 303.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 303.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 302.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 301.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 301.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 301.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 300.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 298.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 298.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 297.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 296.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 295.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 295.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 292.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 290.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 290.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 290.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 286.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 284.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 283.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 282.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 280.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 280.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 280.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 279.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 279.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 276.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 274.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 274.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 273.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 272.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 272.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 270.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 270.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 268.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 268.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 268.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 267.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 266.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 265.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 265.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 265.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 264.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 264.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 263.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 261.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 260.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 259.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 258.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 256.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 255.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 255.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 252.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 251.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 251.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 251.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 251.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 250.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 247.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 241.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 240.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 237.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 237.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 235.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 226.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 226.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 224.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 224.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 223.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 221.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 218.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 218.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 214.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 214.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 211.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 209.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 208.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 204.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 204.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 203.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 201.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 198.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 193.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 193.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 184.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 178.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 143.7
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 113.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 113.1
FF:10151-102I7 76 years, female 113.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 0.0
Pig sample Sample description nTPM
Amygdala
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 174.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 174.0
Samples: 4

Max nTPM: 181.2
Min nTPM: 161.0
Sample A Male 161.0
Sample B Male 181.2
Sample C Female 179.5
Sample D Female 174.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 6.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 6.7
69782276 Antisense, RP_050505_02_F07, Mouse strain C57BL/6J (56 days, male) 6.7

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