MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:320.7 nTPM
HPA:320.7 nTPM
GTEx:344.0 nTPM
FANTOM5:139.2 Scaled Tags Per Million
Pig:0.0 nTPM
Mouse:137.0 nTPM
Allen mouse:4.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 320.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 305.8
2019 Male, age 18, unknown 323.0
2586 Male, age 75, left hemisphere 315.4
2666 Male, age 74, left hemisphere 314.5
1827 Male, age 72, unknown 306.0
2828 Female, age 72, unknown 306.0
1870 Female, age 42, unknown 304.5
2411 Female, age 72, unknown 304.4
1833 Male, age 53, unknown 296.0
2219 Male, age 76, both hemispheres 294.7
1830 Male, age 51, unknown 293.4
Dorsal raphe nucleus
nTPM: 314.3
2047 Male, age 72, unknown 329.1
2298 Female, age 72, unknown 320.8
1828 Male, age 53, unknown 315.4
2750 Male, age 76, both hemispheres 311.5
2016 Female, age 72, unknown 294.5
Inferior colliculus
nTPM: 303.0
1890 Male, age 53, unknown 313.4
2097 Female, age 72, unknown 310.7
1848 Female, age 42, unknown 296.2
2849 Male, age 72, unknown 291.9
Median raphe nucleus
nTPM: 313.4
2220 Male, age 76, midline 313.4
Pedunculopontine tegmental nucleus
nTPM: 316.6
2338 Male, age 61, both hemispheres 335.6
2334 Male, age 80, both hemispheres 313.5
1921 Female, age 85, both hemispheres 300.8
Periaquaductal grey, anterior
nTPM: 310.2
1947 Male, age 18, unknown 311.3
1795 Male, age 51, unknown 311.2
2502 Female, age 75, unknown 308.0
Periaquaductal grey, dorsal
nTPM: 294.9
2850 Male, age 76, both hemispheres 296.4
1831 Male, age 72, unknown 295.8
2464 Female, age 72, unknown 294.3
1840 Male, age 53, unknown 292.9
Periaquaductal grey, lateral
nTPM: 293.6
2272 Male, age 74, both hemispheres 300.3
2053 Male, age 18, unknown 291.8
2140 Male, age 76, both hemispheres 288.5
Pretectal area
nTPM: 306.5
2007 Male, age 72, unknown 323.3
1817 Female, age 42, unknown 322.7
1944 Female, age 72, unknown 321.4
1816 Male, age 51, unknown 320.7
1815 Male, age 53, unknown 309.4
2667 Female, age 75, unknown 305.1
2273 Male, age 74, both hemispheres 296.3
2407 Male, age 75, both hemispheres 294.2
2825 Male, age 18, unknown 294.0
2316 Male, age 76, right hemisphere 292.8
2224 Female, age 72, unknown 292.2
Red nucleus
nTPM: 311.3
1821 Female, age 72, unknown 326.5
2503 Female, age 72, unknown 324.6
2725 Female, age 75, unknown 319.8
2785 Male, age 18, unknown 314.7
1865 Male, age 51, unknown 313.0
2588 Male, age 74, left hemisphere 307.6
1904 Male, age 53, unknown 306.7
2769 Male, age 72, unknown 306.1
2227 Male, age 72, unknown 305.9
2823 Male, age 76, right hemisphere 304.5
2584 Male, age 75, left hemisphere 304.4
1954 Female, age 42, unknown 302.3
Substantia nigra
nTPM: 320.7
1916 Female, age 42, unknown 340.4
1851 Male, age 51, unknown 338.9
1889 Female, age 72, unknown 325.8
2665 Male, age 74, both hemispheres 322.8
1941 Male, age 53, unknown 322.7
2241 Male, age 72, unknown 318.9
2590 Female, age 75, unknown 312.1
2699 Male, age 18, unknown 311.6
2409 Female, age 72, unknown 308.4
2583 Male, age 75, right hemisphere 305.2
Superior colliculus
nTPM: 301.8
2087 Female, age 72, unknown 312.1
2587 Male, age 74, left hemisphere 310.1
1796 Male, age 53, unknown 309.2
2261 Male, age 18, unknown 302.6
2668 Female, age 75, unknown 302.5
2664 Male, age 75, both hemispheres 301.5
1913 Female, age 42, unknown 297.2
1895 Male, age 76, right hemisphere 295.7
1995 Male, age 72, unknown 294.1
1839 Male, age 51, unknown 293.2
Ventral tegmental area
nTPM: 311.7
1915 Female, age 42, unknown 326.1
2410 Female, age 72, unknown 316.8
2218 Male, age 76, both hemispheres 311.9
2223 Female, age 72, unknown 311.4
1942 Male, age 51, unknown 303.1
2021 Male, age 53, unknown 300.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 344.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 344.0
Samples: 139

Max nTPM: 686.6
Min nTPM: 178.4
Std nTPM: 85.1
Median nTPM: 333.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 686.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 646.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 631.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 547.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 529.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 509.5
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 495.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 492.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 486.3
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 478.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 462.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 139.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 139.2
FF:10158-103A5 76 years, female 139.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 0.0
Pig sample Sample description nTPM
Midbrain
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0
Periaqueductal gray
nTPM: 0.0
Samples: 3

Max nTPM: 0.0
Min nTPM: 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0
Substantia nigra
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0
Superior colliculi
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 137.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 137.1
Samples: 4

Max nTPM: 151.6
Min nTPM: 123.5
Sample A Male 148.9
Sample B Male 124.2
Sample C Female 123.5
Sample D Female 151.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.6
69782276 Antisense, RP_050505_02_F07, Mouse strain C57BL/6J (56 days, male) 4.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.