BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:40.1 nTPM
HPA:40.1 nTPM
GTEx:36.9 nTPM
FANTOM5:29.7 Scaled Tags Per Million
Pig:33.4 nTPM
Mouse:19.8 nTPM

CAUDATE - Antibody stainingi
Antibody HPA014615
Glial cells Medium
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 40.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 35.6
2481 Female, age 94, left hemisphere 36.5
2290 Female, age 72, unknown 36.3
1857 Female, age 85, left hemisphere 35.8
1854 Male, age 80, left hemisphere 35.7
1781 Male, age 74, unknown 35.6
2289 Male, age 61, right hemisphere 35.6
2846 Female, age 79, unknown 35.5
2288 Male, age 75, left hemisphere 34.2
Claustrum
nTPM: 37.3
2198 Male, age 80, both hemispheres 40.3
2491 Male, age 75, both hemispheres 39.1
2568 Male, age 61, both hemispheres 38.7
1956 Male, age 74, unknown 37.9
2284 Female, age 91, both hemispheres 36.7
2196 Female, age 79, unknown 36.6
2645 Female, age 72, unknown 36.2
2292 Female, age 85, both hemispheres 35.9
2392 Female, age 94, both hemispheres 34.4
Globus pallidus, externus
nTPM: 40.1
2772 Female, age 79, unknown 43.7
1996 Male, age 80, right hemisphere 39.5
2646 Male, age 61, right hemisphere 39.4
2567 Female, age 72, unknown 39.3
2395 Male, age 75, both hemispheres 38.4
Globus pallidus, internus
nTPM: 39.2
2778 Female, age 91, both hemispheres 40.6
2287 Male, age 75, right hemisphere 40.5
1818 Male, age 74, unknown 40.1
2483 Female, age 94, right hemisphere 39.9
2111 Female, age 85, right hemisphere 38.3
2037 Male, age 80, right hemisphere 37.5
2566 Female, age 72, unknown 37.4
Nucleus accumbens
nTPM: 35.9
1856 Female, age 91, right hemisphere 38.7
2824 Male, age 61, right hemisphere 38.2
1806 Female, age 85, left hemisphere 37.0
1783 Male, age 74, unknown 35.9
2732 Male, age 80, right hemisphere 35.7
2286 Male, age 75, left hemisphere 35.1
2698 Female, age 72, unknown 33.7
2391 Female, age 94, left hemisphere 32.9
Nucleus basalis of Meynert
nTPM: 37.4
2569 Male, age 61, both hemispheres 40.8
2393 Male, age 80, right hemisphere 36.3
2484 Female, age 94, left hemisphere 36.3
2821 Male, age 75, both hemispheres 36.3
Nucleus of the diagonal band
nTPM: 36.7
2775 Male, age 80, right hemisphere 38.5
1812 Female, age 91, both hemispheres 37.8
2029 Male, age 61, right hemisphere 37.6
1979 Male, age 74, unknown 35.4
2195 Female, age 85, both hemispheres 34.1
Olfactory tubercle
nTPM: 36.1
1846 Male, age 80, right hemisphere 37.6
1998 Female, age 91, both hemispheres 37.0
2487 Female, age 94, left hemisphere 35.8
2856 Male, age 75, right hemisphere 33.9
Putamen
nTPM: 35.4
2647 Male, age 75, left hemisphere 37.2
1937 Female, age 91, right hemisphere 36.9
2466 Female, age 79, unknown 35.3
2482 Female, age 94, left hemisphere 35.2
1838 Male, age 80, right hemisphere 34.9
2489 Female, age 72, unknown 34.5
1829 Male, age 74, unknown 33.5
Septal nuclei
nTPM: 36.1
2394 Male, age 61, left hemisphere 39.5
2031 Female, age 72, unknown 37.9
1960 Male, age 74, unknown 37.2
2009 Female, age 91, both hemispheres 35.7
2059 Female, age 85, both hemispheres 35.7
2199 Male, age 80, right hemisphere 34.9
2629 Female, age 94, right hemisphere 32.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 36.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 34.4
Samples: 246

Max nTPM: 68.0
Min nTPM: 11.1
Std nTPM: 8.9
Median nTPM: 33.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 68.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 67.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 67.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 66.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 61.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 59.0
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 56.9
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 55.1
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 52.7
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 52.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 51.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 33.2
Samples: 246

Max nTPM: 97.2
Min nTPM: 13.9
Std nTPM: 10.3
Median nTPM: 32.5
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 97.2
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 75.4
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 74.2
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 64.1
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 57.7
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 57.4
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 56.9
GTEX-1JJEA-0011-R6a-SM-EXUS1 60-69 years, male 55.4
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 53.9
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 51.5
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 51.1
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Brain - Putamen (basal ganglia)
Average nTPM: 36.9
Samples: 205

Max nTPM: 99.3
Min nTPM: 18.9
Std nTPM: 9.6
Median nTPM: 36.9
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 99.3
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 73.9
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 62.3
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 60.2
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 59.9
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 54.1
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 51.8
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 51.8
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 51.8
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 51.7
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 51.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 29.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 21.9
FF:10164-103B2 76 years, female 21.9
Globus pallidus
Scaled Tags Per Million: 29.7
FF:10175-103C4 60 years, female 34.7
FF:10161-103A8 76 years, female 24.7
Nucleus accumbens
Scaled Tags Per Million: 29.0
FF:10037-101F1 23-56 years, mixed 29.0
Putamen
Scaled Tags Per Million: 27.8
FF:10176-103C5 60 years, female 27.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 33.4
Pig sample Sample description nTPM
Caudate
nTPM: 28.7
Samples: 4

Max nTPM: 37.3
Min nTPM: 23.6
Sample A Female 23.6
Sample B Female 37.3
Sample C Male 27.9
Sample D Male 25.9
Putamen
nTPM: 30.9
Samples: 4

Max nTPM: 34.4
Min nTPM: 27.1
Sample A Female 31.6
Sample B Female 27.1
Sample C Male 30.6
Sample D Male 34.4
Septum
nTPM: 33.4
Samples: 4

Max nTPM: 41.3
Min nTPM: 23.2
Sample A Female 29.4
Sample B Female 39.7
Sample C Male 23.2
Sample D Male 41.3
Ventral pallidum
nTPM: 30.2
Samples: 4

Max nTPM: 40.8
Min nTPM: 20.7
Sample A Female 20.7
Sample B Female 40.8
Sample C Male 30.8
Sample D Male 28.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 19.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 14.2
Samples: 4

Max nTPM: 22.9
Min nTPM: 10.2
Sample A Male 10.2
Sample B Male 11.5
Sample C Female 12.0
Sample D Female 22.9
Septum
nTPM: 19.9
Samples: 4

Max nTPM: 23.1
Min nTPM: 17.6
Sample A Male 17.6
Sample B Male 19.3
Sample C Female 23.1
Sample D Female 19.4
Ventral forebrain
nTPM: 14.4
Samples: 4

Max nTPM: 15.9
Min nTPM: 12.5
Sample A Male 13.5
Sample B Male 12.5
Sample C Female 15.9
Sample D Female 15.5

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The Human Protein Atlas

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