MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:40.2 nTPM
HPA:40.2 nTPM
GTEx:54.1 nTPM
FANTOM5:31.5 Scaled Tags Per Million
Pig:43.9 nTPM
Mouse:21.5 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 40.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 38.2
2019 Male, age 18, unknown 41.3
2411 Female, age 72, unknown 40.3
2586 Male, age 75, left hemisphere 39.2
2828 Female, age 72, unknown 38.6
2219 Male, age 76, both hemispheres 38.5
1827 Male, age 72, unknown 37.8
1870 Female, age 42, unknown 37.6
2666 Male, age 74, left hemisphere 36.9
1833 Male, age 53, unknown 36.1
1830 Male, age 51, unknown 35.7
Dorsal raphe nucleus
nTPM: 38.9
2298 Female, age 72, unknown 41.5
2750 Male, age 76, both hemispheres 40.9
1828 Male, age 53, unknown 38.5
2047 Male, age 72, unknown 38.3
2016 Female, age 72, unknown 35.1
Inferior colliculus
nTPM: 36.5
2097 Female, age 72, unknown 40.2
1890 Male, age 53, unknown 38.2
1848 Female, age 42, unknown 34.4
2849 Male, age 72, unknown 33.2
Median raphe nucleus
nTPM: 37.5
2220 Male, age 76, midline 37.5
Pedunculopontine tegmental nucleus
nTPM: 37.0
1921 Female, age 85, both hemispheres 38.3
2334 Male, age 80, both hemispheres 36.7
2338 Male, age 61, both hemispheres 36.0
Periaquaductal grey, anterior
nTPM: 37.1
2502 Female, age 75, unknown 38.0
1947 Male, age 18, unknown 36.8
1795 Male, age 51, unknown 36.6
Periaquaductal grey, dorsal
nTPM: 35.2
1831 Male, age 72, unknown 35.9
2464 Female, age 72, unknown 35.9
2850 Male, age 76, both hemispheres 35.0
1840 Male, age 53, unknown 34.1
Periaquaductal grey, lateral
nTPM: 34.5
2272 Male, age 74, both hemispheres 35.1
2053 Male, age 18, unknown 34.5
2140 Male, age 76, both hemispheres 34.0
Pretectal area
nTPM: 38.5
2007 Male, age 72, unknown 43.8
1816 Male, age 51, unknown 42.3
1817 Female, age 42, unknown 41.0
1944 Female, age 72, unknown 40.7
1815 Male, age 53, unknown 39.4
2667 Female, age 75, unknown 37.8
2273 Male, age 74, both hemispheres 37.0
2224 Female, age 72, unknown 36.5
2825 Male, age 18, unknown 35.4
2407 Male, age 75, both hemispheres 35.3
2316 Male, age 76, right hemisphere 34.6
Red nucleus
nTPM: 39.6
1821 Female, age 72, unknown 42.0
1904 Male, age 53, unknown 41.4
2227 Male, age 72, unknown 40.7
2588 Male, age 74, left hemisphere 40.2
2769 Male, age 72, unknown 39.8
1865 Male, age 51, unknown 39.7
2785 Male, age 18, unknown 39.4
2725 Female, age 75, unknown 39.1
2823 Male, age 76, right hemisphere 38.8
2503 Female, age 72, unknown 38.5
1954 Female, age 42, unknown 38.2
2584 Male, age 75, left hemisphere 37.8
Substantia nigra
nTPM: 40.2
1916 Female, age 42, unknown 46.4
1851 Male, age 51, unknown 45.3
1941 Male, age 53, unknown 41.3
1889 Female, age 72, unknown 41.0
2665 Male, age 74, both hemispheres 40.6
2241 Male, age 72, unknown 38.8
2583 Male, age 75, right hemisphere 38.8
2590 Female, age 75, unknown 38.5
2699 Male, age 18, unknown 38.3
2409 Female, age 72, unknown 33.2
Superior colliculus
nTPM: 38.1
2587 Male, age 74, left hemisphere 40.8
2261 Male, age 18, unknown 40.2
2087 Female, age 72, unknown 39.8
2668 Female, age 75, unknown 39.0
1796 Male, age 53, unknown 38.3
1913 Female, age 42, unknown 37.7
2664 Male, age 75, both hemispheres 37.4
1995 Male, age 72, unknown 36.9
1895 Male, age 76, right hemisphere 35.6
1839 Male, age 51, unknown 35.0
Ventral tegmental area
nTPM: 39.1
2410 Female, age 72, unknown 40.9
2218 Male, age 76, both hemispheres 40.3
1915 Female, age 42, unknown 40.2
2223 Female, age 72, unknown 38.8
1942 Male, age 51, unknown 37.9
2021 Male, age 53, unknown 36.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 54.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 54.1
Samples: 139

Max nTPM: 102.6
Min nTPM: 27.6
Std nTPM: 15.6
Median nTPM: 53.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 102.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 95.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 93.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 93.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 92.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 92.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 83.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 82.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 81.6
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 79.8
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 78.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 31.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 31.5
FF:10158-103A5 76 years, female 31.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 43.9
Pig sample Sample description nTPM
Midbrain
nTPM: 42.2
Samples: 4

Max nTPM: 47.9
Min nTPM: 37.0
Sample A Female 47.9
Sample B Female 41.1
Sample C Male 37.0
Sample D Male 42.9
Periaqueductal gray
nTPM: 34.1
Samples: 3

Max nTPM: 35.5
Min nTPM: 31.3
Sample B Female 35.5
Sample C Male 31.3
Sample D Male 35.5
Substantia nigra
nTPM: 35.8
Samples: 4

Max nTPM: 42.0
Min nTPM: 29.0
Sample A Female 42.0
Sample B Female 38.6
Sample C Male 29.0
Sample D Male 33.7
Superior colliculi
nTPM: 43.9
Samples: 4

Max nTPM: 52.8
Min nTPM: 31.9
Sample A Female 45.7
Sample B Female 52.8
Sample C Male 31.9
Sample D Male 45.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 21.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 21.5
Samples: 4

Max nTPM: 24.3
Min nTPM: 19.0
Sample A Male 21.5
Sample B Male 19.0
Sample C Female 21.2
Sample D Female 24.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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