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DBNDD2
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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:627.6 nTPM
HPA:627.6 nTPM
GTEx:484.1 nTPM
FANTOM5:206.7 Scaled Tags Per Million
Pig:25.7 nTPM
Mouse:109.8 nTPM
Allen mouse:22.0 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 627.6
Sample id Sample description nTPM
Amygdala
nTPM: 627.6
2814 Male, age 76, right hemisphere 705.4
2514 Male, age 75, right hemisphere 641.1
2695 Female, age 67, right hemisphere 637.9
2517 Female, age 94, left hemisphere 597.9
1987 Female, age 91, left hemisphere 555.6
Basal amygdala
nTPM: 573.0
2827 Female, age 67, right hemisphere 605.8
2685 Female, age 94, left hemisphere 604.2
2110 Male, age 80, left hemisphere 585.6
2609 Male, age 75, right hemisphere 573.0
1955 Male, age 76, both hemispheres 568.9
2243 Female, age 91, right hemisphere 500.8
Central amygdala
nTPM: 596.9
1905 Male, age 76, both hemispheres 644.4
2826 Female, age 94, left hemisphere 640.6
2701 Female, age 91, right hemisphere 574.4
2239 Male, age 80, left hemisphere 567.5
2515 Male, age 75, right hemisphere 557.5
Corticomedial amygdala
nTPM: 532.8
2428 Male, age 75, right hemisphere 570.9
2429 Female, age 94, left hemisphere 551.9
2240 Male, age 76, both hemispheres 536.2
2535 Female, age 67, right hemisphere 535.8
2829 Male, age 80, left hemisphere 522.6
2242 Female, age 91, right hemisphere 479.3
Lateral amygdala
nTPM: 621.8
2830 Female, age 67, right hemisphere 660.4
1883 Male, age 76, both hemispheres 639.0
2516 Male, age 75, right hemisphere 629.7
2256 Male, age 80, left hemisphere 624.7
2534 Female, age 94, left hemisphere 615.9
2255 Female, age 91, right hemisphere 561.3
Stria terminalis, bed nucleus
nTPM: 528.2
1974 Female, age 91, both hemispheres 546.1
2201 Male, age 74, unknown 531.6
2486 Female, age 94, both hemispheres 507.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 484.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 484.1
Samples: 152

Max nTPM: 1992.4
Min nTPM: 64.1
Std nTPM: 285.7
Median nTPM: 395.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1992.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 1478.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 1475.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 1333.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 1271.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 1197.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1008.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 994.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 986.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 923.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 900.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 880.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 847.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 833.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 812.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 804.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 800.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 778.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 755.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 741.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 734.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 731.0
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 729.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 711.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 706.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 699.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 695.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 689.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 684.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 683.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 671.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 671.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 668.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 665.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 656.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 653.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 618.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 618.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 609.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 604.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 602.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 596.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 577.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 571.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 560.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 553.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 546.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 540.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 529.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 529.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 520.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 517.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 509.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 508.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 500.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 494.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 486.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 483.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 479.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 469.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 466.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 459.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 457.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 456.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 455.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 453.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 442.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 434.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 429.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 420.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 415.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 414.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 409.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 405.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 397.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 397.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 393.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 391.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 389.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 386.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 376.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 374.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 371.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 368.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 363.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 362.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 361.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 354.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 351.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 346.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 345.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 345.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 345.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 338.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 336.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 334.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 328.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 326.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 326.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 326.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 324.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 322.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 322.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 321.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 319.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 319.5
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 318.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 315.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 314.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 314.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 313.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 312.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 310.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 305.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 301.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 300.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 297.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 295.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 295.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 293.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 291.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 288.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 284.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 276.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 269.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 263.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 261.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 257.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 247.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 235.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 233.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 232.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 231.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 230.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 228.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 228.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 227.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 225.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 224.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 223.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 215.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 210.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 209.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 193.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 184.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 182.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 167.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 166.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 154.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 151.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 144.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 64.1
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 206.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 206.7
FF:10151-102I7 76 years, female 206.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 25.7
Pig sample Sample description nTPM
Amygdala
nTPM: 25.7
Samples: 4

Max nTPM: 29.9
Min nTPM: 19.8
Sample A Female 29.9
Sample B Female 28.1
Sample C Male 25.1
Sample D Male 19.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 109.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 109.8
Samples: 4

Max nTPM: 130.0
Min nTPM: 100.2
Sample A Male 100.3
Sample B Male 108.6
Sample C Female 130.0
Sample D Female 100.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 22.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 22.0
45668 Antisense, RP_040324_01_H05, Mouse strain C57BL/6J (56 days, male) 22.0
67936386 Antisense, RP_040324_01_H05, Mouse strain C57BL/6J (56 days, male) 10.2

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