MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:808.2 nTPM
HPA:808.2 nTPM
GTEx:915.3 nTPM
FANTOM5:908.4 Scaled Tags Per Million
Pig:77.5 nTPM
Mouse:196.2 nTPM
Allen mouse:16.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 808.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 715.9
2411 Female, age 72, unknown 831.4
1830 Male, age 51, unknown 796.2
1833 Male, age 53, unknown 791.7
1870 Female, age 42, unknown 768.4
2019 Male, age 18, unknown 762.5
2828 Female, age 72, unknown 691.1
1827 Male, age 72, unknown 633.8
2666 Male, age 74, left hemisphere 633.4
2219 Male, age 76, both hemispheres 629.2
2586 Male, age 75, left hemisphere 621.7
Dorsal raphe nucleus
nTPM: 625.3
2750 Male, age 76, both hemispheres 795.0
2016 Female, age 72, unknown 628.3
1828 Male, age 53, unknown 612.6
2047 Male, age 72, unknown 546.1
2298 Female, age 72, unknown 544.5
Inferior colliculus
nTPM: 606.3
1848 Female, age 42, unknown 620.1
2849 Male, age 72, unknown 611.2
1890 Male, age 53, unknown 607.5
2097 Female, age 72, unknown 586.4
Median raphe nucleus
nTPM: 589.5
2220 Male, age 76, midline 589.5
Pedunculopontine tegmental nucleus
nTPM: 676.6
2334 Male, age 80, both hemispheres 702.9
2338 Male, age 61, both hemispheres 681.6
1921 Female, age 85, both hemispheres 645.2
Periaquaductal grey, anterior
nTPM: 566.1
1947 Male, age 18, unknown 591.0
2502 Female, age 75, unknown 565.2
1795 Male, age 51, unknown 542.3
Periaquaductal grey, dorsal
nTPM: 557.6
2464 Female, age 72, unknown 637.4
1831 Male, age 72, unknown 572.2
2850 Male, age 76, both hemispheres 513.8
1840 Male, age 53, unknown 506.9
Periaquaductal grey, lateral
nTPM: 564.5
2053 Male, age 18, unknown 595.5
2272 Male, age 74, both hemispheres 591.9
2140 Male, age 76, both hemispheres 506.2
Pretectal area
nTPM: 608.4
1815 Male, age 53, unknown 713.5
2316 Male, age 76, right hemisphere 656.4
1817 Female, age 42, unknown 648.0
2407 Male, age 75, both hemispheres 643.9
2007 Male, age 72, unknown 626.6
2825 Male, age 18, unknown 606.7
2273 Male, age 74, both hemispheres 587.0
2224 Female, age 72, unknown 565.3
2667 Female, age 75, unknown 554.2
1944 Female, age 72, unknown 547.1
1816 Male, age 51, unknown 543.2
Red nucleus
nTPM: 808.2
1865 Male, age 51, unknown 926.9
1904 Male, age 53, unknown 905.1
1821 Female, age 72, unknown 893.1
2823 Male, age 76, right hemisphere 870.3
2769 Male, age 72, unknown 815.1
2503 Female, age 72, unknown 799.9
1954 Female, age 42, unknown 798.0
2785 Male, age 18, unknown 796.7
2227 Male, age 72, unknown 796.5
2588 Male, age 74, left hemisphere 724.6
2725 Female, age 75, unknown 724.6
2584 Male, age 75, left hemisphere 648.1
Substantia nigra
nTPM: 639.5
2583 Male, age 75, right hemisphere 726.6
2590 Female, age 75, unknown 687.5
2409 Female, age 72, unknown 677.3
1851 Male, age 51, unknown 670.7
1889 Female, age 72, unknown 668.3
2699 Male, age 18, unknown 619.5
1941 Male, age 53, unknown 594.7
2241 Male, age 72, unknown 591.3
1916 Female, age 42, unknown 579.4
2665 Male, age 74, both hemispheres 579.3
Superior colliculus
nTPM: 677.8
1995 Male, age 72, unknown 830.3
1913 Female, age 42, unknown 816.3
2668 Female, age 75, unknown 739.8
1895 Male, age 76, right hemisphere 723.2
2587 Male, age 74, left hemisphere 701.9
1839 Male, age 51, unknown 670.6
1796 Male, age 53, unknown 609.6
2087 Female, age 72, unknown 572.1
2261 Male, age 18, unknown 557.0
2664 Male, age 75, both hemispheres 557.0
Ventral tegmental area
nTPM: 666.1
2223 Female, age 72, unknown 774.0
2410 Female, age 72, unknown 751.3
1915 Female, age 42, unknown 623.8
2218 Male, age 76, both hemispheres 618.8
2021 Male, age 53, unknown 615.7
1942 Male, age 51, unknown 612.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 915.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 915.3
Samples: 139

Max nTPM: 3490.2
Min nTPM: 262.3
Std nTPM: 535.4
Median nTPM: 776.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 3490.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2839.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 2679.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 2650.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 2325.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 2269.6
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 1906.4
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 1854.8
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 1812.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 1736.8
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 1645.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 908.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 908.4
FF:10158-103A5 76 years, female 908.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 77.5
Pig sample Sample description nTPM
Midbrain
nTPM: 77.5
Samples: 4

Max nTPM: 156.8
Min nTPM: 44.9
Sample A Female 156.8
Sample B Female 62.8
Sample C Male 45.5
Sample D Male 44.9
Periaqueductal gray
nTPM: 46.2
Samples: 3

Max nTPM: 52.1
Min nTPM: 41.9
Sample B Female 52.1
Sample C Male 41.9
Sample D Male 44.6
Substantia nigra
nTPM: 65.4
Samples: 4

Max nTPM: 82.7
Min nTPM: 40.8
Sample A Female 82.5
Sample B Female 40.8
Sample C Male 55.6
Sample D Male 82.7
Superior colliculi
nTPM: 61.0
Samples: 4

Max nTPM: 80.9
Min nTPM: 31.6
Sample A Female 80.9
Sample B Female 31.6
Sample C Male 62.7
Sample D Male 68.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 196.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 196.2
Samples: 4

Max nTPM: 215.9
Min nTPM: 174.8
Sample A Male 197.2
Sample B Male 174.8
Sample C Female 196.9
Sample D Female 215.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 16.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 16.4
45668 Antisense, RP_040324_01_H05, Mouse strain C57BL/6J (56 days, male) 16.4
67936386 Antisense, RP_040324_01_H05, Mouse strain C57BL/6J (56 days, male) 7.9

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.