BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:37.7 nTPM
HPA:37.7 nTPM
GTEx:41.7 nTPM
FANTOM5:62.5 Scaled Tags Per Million
Pig:26.9 nTPM
Mouse:63.4 nTPM
Allen mouse:0.0 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA016552
Glial cells Low
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 37.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 37.7
2481 Female, age 94, left hemisphere 43.4
2290 Female, age 72, unknown 38.1
1854 Male, age 80, left hemisphere 37.8
1857 Female, age 85, left hemisphere 37.7
2288 Male, age 75, left hemisphere 36.9
2846 Female, age 79, unknown 36.8
2289 Male, age 61, right hemisphere 36.1
1781 Male, age 74, unknown 34.8
Claustrum
nTPM: 33.6
2196 Female, age 79, unknown 34.4
2491 Male, age 75, both hemispheres 34.3
2198 Male, age 80, both hemispheres 33.8
2392 Female, age 94, both hemispheres 33.7
1956 Male, age 74, unknown 33.6
2292 Female, age 85, both hemispheres 33.5
2568 Male, age 61, both hemispheres 33.4
2284 Female, age 91, both hemispheres 32.9
2645 Female, age 72, unknown 32.9
Globus pallidus, externus
nTPM: 37.1
2772 Female, age 79, unknown 38.8
1996 Male, age 80, right hemisphere 38.4
2395 Male, age 75, both hemispheres 37.5
2646 Male, age 61, right hemisphere 36.8
2567 Female, age 72, unknown 33.9
Globus pallidus, internus
nTPM: 36.7
2483 Female, age 94, right hemisphere 39.6
1818 Male, age 74, unknown 37.3
2778 Female, age 91, both hemispheres 37.3
2287 Male, age 75, right hemisphere 37.0
2037 Male, age 80, right hemisphere 36.3
2111 Female, age 85, right hemisphere 35.0
2566 Female, age 72, unknown 34.3
Nucleus accumbens
nTPM: 37.4
2391 Female, age 94, left hemisphere 40.8
2286 Male, age 75, left hemisphere 40.0
1856 Female, age 91, right hemisphere 38.3
2824 Male, age 61, right hemisphere 37.1
1806 Female, age 85, left hemisphere 36.1
1783 Male, age 74, unknown 36.0
2698 Female, age 72, unknown 35.6
2732 Male, age 80, right hemisphere 34.9
Nucleus basalis of Meynert
nTPM: 36.1
2569 Male, age 61, both hemispheres 37.2
2393 Male, age 80, right hemisphere 36.7
2484 Female, age 94, left hemisphere 36.0
2821 Male, age 75, both hemispheres 34.5
Nucleus of the diagonal band
nTPM: 35.6
1979 Male, age 74, unknown 37.0
1812 Female, age 91, both hemispheres 36.1
2775 Male, age 80, right hemisphere 35.8
2195 Female, age 85, both hemispheres 34.9
2029 Male, age 61, right hemisphere 34.3
Olfactory tubercle
nTPM: 35.0
1846 Male, age 80, right hemisphere 36.5
2856 Male, age 75, right hemisphere 35.2
1998 Female, age 91, both hemispheres 34.7
2487 Female, age 94, left hemisphere 33.7
Putamen
nTPM: 36.8
2482 Female, age 94, left hemisphere 40.5
1937 Female, age 91, right hemisphere 37.9
1838 Male, age 80, right hemisphere 37.0
2466 Female, age 79, unknown 36.8
1829 Male, age 74, unknown 35.8
2647 Male, age 75, left hemisphere 35.0
2489 Female, age 72, unknown 34.8
Septal nuclei
nTPM: 35.4
2031 Female, age 72, unknown 36.3
2199 Male, age 80, right hemisphere 36.2
1960 Male, age 74, unknown 35.6
2059 Female, age 85, both hemispheres 35.3
2394 Male, age 61, left hemisphere 35.1
2009 Female, age 91, both hemispheres 34.6
2629 Female, age 94, right hemisphere 34.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 41.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 39.8
Samples: 246

Max nTPM: 114.2
Min nTPM: 17.2
Std nTPM: 13.6
Median nTPM: 36.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 114.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 105.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 94.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 83.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 76.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 74.0
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 69.6
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 68.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 67.6
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 65.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 65.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 40.2
Samples: 246

Max nTPM: 160.6
Min nTPM: 16.0
Std nTPM: 15.3
Median nTPM: 37.5
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 160.6
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 129.1
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 98.0
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 79.5
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 76.6
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 73.6
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 71.8
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 69.6
GTEX-144GO-0011-R6b-SM-5S2V7 60-69 years, male 69.4
GTEX-1C64N-0011-R6a-SM-7IGO9 50-59 years, male 66.4
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 66.1
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Brain - Putamen (basal ganglia)
Average nTPM: 41.7
Samples: 205

Max nTPM: 108.0
Min nTPM: 23.0
Std nTPM: 14.6
Median nTPM: 38.1
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 108.0
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 107.0
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 101.3
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 100.5
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 81.7
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 79.1
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 73.3
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 73.0
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 69.2
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 68.5
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 65.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 62.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 39.3
FF:10164-103B2 76 years, female 39.3
Globus pallidus
Scaled Tags Per Million: 62.5
FF:10175-103C4 60 years, female 95.5
FF:10161-103A8 76 years, female 29.6
Nucleus accumbens
Scaled Tags Per Million: 19.9
FF:10037-101F1 23-56 years, mixed 19.9
Putamen
Scaled Tags Per Million: 44.7
FF:10176-103C5 60 years, female 44.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 26.9
Pig sample Sample description nTPM
Caudate
nTPM: 25.3
Samples: 4

Max nTPM: 30.7
Min nTPM: 19.9
Sample A Female 19.9
Sample B Female 26.2
Sample C Male 30.7
Sample D Male 24.5
Putamen
nTPM: 27.0
Samples: 4

Max nTPM: 35.1
Min nTPM: 22.8
Sample A Female 22.8
Sample B Female 25.0
Sample C Male 35.1
Sample D Male 24.9
Septum
nTPM: 25.7
Samples: 4

Max nTPM: 28.1
Min nTPM: 21.5
Sample A Female 25.2
Sample B Female 27.9
Sample C Male 21.5
Sample D Male 28.1
Ventral pallidum
nTPM: 25.7
Samples: 4

Max nTPM: 29.3
Min nTPM: 24.2
Sample A Female 24.2
Sample B Female 29.3
Sample C Male 24.8
Sample D Male 24.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 63.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 63.4
Samples: 4

Max nTPM: 64.8
Min nTPM: 60.0
Sample A Male 64.6
Sample B Male 64.8
Sample C Female 60.0
Sample D Female 64.2
Septum
nTPM: 57.5
Samples: 4

Max nTPM: 59.7
Min nTPM: 53.9
Sample A Male 53.9
Sample B Male 59.7
Sample C Female 59.3
Sample D Female 57.2
Ventral forebrain
nTPM: 53.3
Samples: 4

Max nTPM: 55.9
Min nTPM: 49.3
Sample A Male 53.1
Sample B Male 49.3
Sample C Female 54.9
Sample D Female 55.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
71492910 Antisense, RP_050913_01_G07, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
71492910 Antisense, RP_050913_01_G07, Mouse strain C57BL/6J (56 days, male) 0.0

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