MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:36.1 nTPM
HPA:36.1 nTPM
GTEx:37.6 nTPM
FANTOM5:29.5 Scaled Tags Per Million
Pig:23.4 nTPM
Mouse:49.3 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 36.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 35.0
1870 Female, age 42, unknown 35.9
1827 Male, age 72, unknown 35.7
2411 Female, age 72, unknown 35.7
2019 Male, age 18, unknown 35.2
2219 Male, age 76, both hemispheres 35.2
2586 Male, age 75, left hemisphere 34.9
2828 Female, age 72, unknown 34.9
1830 Male, age 51, unknown 34.7
1833 Male, age 53, unknown 34.7
2666 Male, age 74, left hemisphere 33.3
Dorsal raphe nucleus
nTPM: 36.1
2298 Female, age 72, unknown 37.2
2047 Male, age 72, unknown 36.6
2750 Male, age 76, both hemispheres 35.7
1828 Male, age 53, unknown 35.5
2016 Female, age 72, unknown 35.5
Inferior colliculus
nTPM: 35.9
2097 Female, age 72, unknown 37.3
1848 Female, age 42, unknown 36.0
1890 Male, age 53, unknown 35.9
2849 Male, age 72, unknown 34.4
Median raphe nucleus
nTPM: 35.9
2220 Male, age 76, midline 35.9
Pedunculopontine tegmental nucleus
nTPM: 36.1
1921 Female, age 85, both hemispheres 36.3
2338 Male, age 61, both hemispheres 36.2
2334 Male, age 80, both hemispheres 35.7
Periaquaductal grey, anterior
nTPM: 35.9
1947 Male, age 18, unknown 36.3
1795 Male, age 51, unknown 35.7
2502 Female, age 75, unknown 35.6
Periaquaductal grey, dorsal
nTPM: 35.6
1840 Male, age 53, unknown 36.5
2464 Female, age 72, unknown 35.7
1831 Male, age 72, unknown 35.2
2850 Male, age 76, both hemispheres 35.1
Periaquaductal grey, lateral
nTPM: 35.1
2053 Male, age 18, unknown 36.2
2140 Male, age 76, both hemispheres 34.7
2272 Male, age 74, both hemispheres 34.4
Pretectal area
nTPM: 36.1
1817 Female, age 42, unknown 37.7
2273 Male, age 74, both hemispheres 37.3
2224 Female, age 72, unknown 36.7
1816 Male, age 51, unknown 36.5
2007 Male, age 72, unknown 36.4
1815 Male, age 53, unknown 36.2
1944 Female, age 72, unknown 36.1
2667 Female, age 75, unknown 35.9
2825 Male, age 18, unknown 35.0
2316 Male, age 76, right hemisphere 34.8
2407 Male, age 75, both hemispheres 34.6
Red nucleus
nTPM: 35.5
1821 Female, age 72, unknown 37.4
1954 Female, age 42, unknown 36.7
1904 Male, age 53, unknown 36.2
2503 Female, age 72, unknown 36.0
1865 Male, age 51, unknown 35.5
2227 Male, age 72, unknown 35.4
2725 Female, age 75, unknown 35.3
2785 Male, age 18, unknown 35.3
2823 Male, age 76, right hemisphere 35.1
2769 Male, age 72, unknown 35.0
2588 Male, age 74, left hemisphere 34.3
2584 Male, age 75, left hemisphere 33.4
Substantia nigra
nTPM: 36.1
1889 Female, age 72, unknown 37.0
1916 Female, age 42, unknown 36.9
2241 Male, age 72, unknown 36.9
2590 Female, age 75, unknown 36.4
1851 Male, age 51, unknown 36.2
2409 Female, age 72, unknown 35.8
2665 Male, age 74, both hemispheres 35.7
2699 Male, age 18, unknown 35.6
1941 Male, age 53, unknown 35.2
2583 Male, age 75, right hemisphere 35.0
Superior colliculus
nTPM: 35.6
1796 Male, age 53, unknown 36.0
2087 Female, age 72, unknown 35.9
1839 Male, age 51, unknown 35.7
1895 Male, age 76, right hemisphere 35.7
2668 Female, age 75, unknown 35.7
1995 Male, age 72, unknown 35.6
2261 Male, age 18, unknown 35.4
2587 Male, age 74, left hemisphere 35.4
1913 Female, age 42, unknown 35.3
2664 Male, age 75, both hemispheres 35.2
Ventral tegmental area
nTPM: 36.0
2410 Female, age 72, unknown 36.9
1915 Female, age 42, unknown 36.3
2223 Female, age 72, unknown 36.1
1942 Male, age 51, unknown 35.6
2218 Male, age 76, both hemispheres 35.6
2021 Male, age 53, unknown 35.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 37.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 37.6
Samples: 139

Max nTPM: 67.4
Min nTPM: 21.2
Std nTPM: 10.0
Median nTPM: 35.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 67.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 64.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 63.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 61.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 59.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 58.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 58.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 57.9
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 57.5
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 56.4
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 55.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 29.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 29.5
FF:10158-103A5 76 years, female 29.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 23.4
Pig sample Sample description nTPM
Midbrain
nTPM: 23.3
Samples: 4

Max nTPM: 26.2
Min nTPM: 21.3
Sample A Female 26.2
Sample B Female 21.3
Sample C Male 22.7
Sample D Male 22.9
Periaqueductal gray
nTPM: 19.6
Samples: 3

Max nTPM: 21.1
Min nTPM: 18.8
Sample B Female 21.1
Sample C Male 18.8
Sample D Male 18.9
Substantia nigra
nTPM: 21.8
Samples: 4

Max nTPM: 24.5
Min nTPM: 20.1
Sample A Female 24.5
Sample B Female 20.1
Sample C Male 21.5
Sample D Male 21.2
Superior colliculi
nTPM: 23.4
Samples: 4

Max nTPM: 25.3
Min nTPM: 18.7
Sample A Female 25.3
Sample B Female 18.7
Sample C Male 24.5
Sample D Male 25.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 49.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 49.3
Samples: 4

Max nTPM: 50.7
Min nTPM: 45.5
Sample A Male 50.7
Sample B Male 50.7
Sample C Female 45.5
Sample D Female 50.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
71492910 Antisense, RP_050913_01_G07, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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