BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:34.8 nTPM
HPA:34.8 nTPM
GTEx:29.7 nTPM
FANTOM5:103.3 Scaled Tags Per Million
Pig:33.5 nTPM
Mouse:127.3 nTPM
Allen mouse:3.0 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA040072
Glial cells Not detected
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 34.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 29.4
2288 Male, age 75, left hemisphere 32.7
2290 Female, age 72, unknown 30.8
1854 Male, age 80, left hemisphere 29.8
2846 Female, age 79, unknown 29.8
2481 Female, age 94, left hemisphere 29.4
2289 Male, age 61, right hemisphere 29.0
1857 Female, age 85, left hemisphere 28.3
1781 Male, age 74, unknown 25.5
Claustrum
nTPM: 28.3
2392 Female, age 94, both hemispheres 31.1
1956 Male, age 74, unknown 29.9
2292 Female, age 85, both hemispheres 29.8
2198 Male, age 80, both hemispheres 28.1
2284 Female, age 91, both hemispheres 27.6
2196 Female, age 79, unknown 27.3
2491 Male, age 75, both hemispheres 27.3
2568 Male, age 61, both hemispheres 27.2
2645 Female, age 72, unknown 26.4
Globus pallidus, externus
nTPM: 32.3
1996 Male, age 80, right hemisphere 34.6
2395 Male, age 75, both hemispheres 34.5
2772 Female, age 79, unknown 32.0
2567 Female, age 72, unknown 30.9
2646 Male, age 61, right hemisphere 29.4
Globus pallidus, internus
nTPM: 34.8
2778 Female, age 91, both hemispheres 39.1
2111 Female, age 85, right hemisphere 37.3
2287 Male, age 75, right hemisphere 35.6
1818 Male, age 74, unknown 35.4
2037 Male, age 80, right hemisphere 34.8
2483 Female, age 94, right hemisphere 32.8
2566 Female, age 72, unknown 28.5
Nucleus accumbens
nTPM: 30.5
2391 Female, age 94, left hemisphere 34.2
2286 Male, age 75, left hemisphere 32.1
2698 Female, age 72, unknown 32.0
2732 Male, age 80, right hemisphere 31.8
2824 Male, age 61, right hemisphere 31.8
1806 Female, age 85, left hemisphere 28.1
1783 Male, age 74, unknown 27.3
1856 Female, age 91, right hemisphere 26.8
Nucleus basalis of Meynert
nTPM: 29.9
2393 Male, age 80, right hemisphere 32.2
2821 Male, age 75, both hemispheres 29.7
2484 Female, age 94, left hemisphere 29.1
2569 Male, age 61, both hemispheres 28.8
Nucleus of the diagonal band
nTPM: 29.1
2195 Female, age 85, both hemispheres 30.9
2775 Male, age 80, right hemisphere 30.0
1979 Male, age 74, unknown 29.4
2029 Male, age 61, right hemisphere 27.9
1812 Female, age 91, both hemispheres 27.1
Olfactory tubercle
nTPM: 28.0
1846 Male, age 80, right hemisphere 29.2
2856 Male, age 75, right hemisphere 28.5
2487 Female, age 94, left hemisphere 27.5
1998 Female, age 91, both hemispheres 27.1
Putamen
nTPM: 29.8
2482 Female, age 94, left hemisphere 32.5
1829 Male, age 74, unknown 30.8
1937 Female, age 91, right hemisphere 30.3
1838 Male, age 80, right hemisphere 29.3
2466 Female, age 79, unknown 29.2
2489 Female, age 72, unknown 28.5
2647 Male, age 75, left hemisphere 28.0
Septal nuclei
nTPM: 29.5
2031 Female, age 72, unknown 32.1
2394 Male, age 61, left hemisphere 31.9
2199 Male, age 80, right hemisphere 30.6
2009 Female, age 91, both hemispheres 29.5
2629 Female, age 94, right hemisphere 28.8
2059 Female, age 85, both hemispheres 27.3
1960 Male, age 74, unknown 26.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 29.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 29.4
Samples: 246

Max nTPM: 64.8
Min nTPM: 16.3
Std nTPM: 5.9
Median nTPM: 28.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 64.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 57.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 57.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 54.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 50.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 47.0
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 43.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 42.3
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 42.3
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 40.0
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 39.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 28.5
Samples: 246

Max nTPM: 50.3
Min nTPM: 12.9
Std nTPM: 5.8
Median nTPM: 27.7
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 50.3
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 46.6
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 44.4
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 44.3
GTEX-11PRG-0011-R6b-SM-DO923 50-59 years, male 43.1
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 43.1
GTEX-14E7W-0011-R6b-SM-5ZZV3 70-79 years, male 42.6
GTEX-11TTK-0011-R6b-SM-DNZZW 60-69 years, female 42.0
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 40.8
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 40.7
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 39.5
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Brain - Putamen (basal ganglia)
Average nTPM: 29.7
Samples: 205

Max nTPM: 50.0
Min nTPM: 17.8
Std nTPM: 5.5
Median nTPM: 28.7
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 50.0
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 48.8
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 48.0
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 45.7
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 45.5
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 45.4
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 43.1
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 42.8
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 42.2
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 40.4
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 39.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 103.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 68.3
FF:10164-103B2 76 years, female 68.3
Globus pallidus
Scaled Tags Per Million: 83.6
FF:10175-103C4 60 years, female 100.2
FF:10161-103A8 76 years, female 67.0
Nucleus accumbens
Scaled Tags Per Million: 84.4
FF:10037-101F1 23-56 years, mixed 84.4
Putamen
Scaled Tags Per Million: 103.3
FF:10176-103C5 60 years, female 103.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 33.5
Pig sample Sample description nTPM
Caudate
nTPM: 25.6
Samples: 4

Max nTPM: 28.2
Min nTPM: 21.2
Sample A Female 28.2
Sample B Female 25.6
Sample C Male 27.5
Sample D Male 21.2
Putamen
nTPM: 33.5
Samples: 4

Max nTPM: 40.4
Min nTPM: 25.3
Sample A Female 37.5
Sample B Female 25.3
Sample C Male 40.4
Sample D Male 30.8
Septum
nTPM: 30.4
Samples: 4

Max nTPM: 34.0
Min nTPM: 28.1
Sample A Female 31.4
Sample B Female 28.2
Sample C Male 34.0
Sample D Male 28.1
Ventral pallidum
nTPM: 28.4
Samples: 4

Max nTPM: 32.3
Min nTPM: 26.8
Sample A Female 26.8
Sample B Female 32.3
Sample C Male 27.6
Sample D Male 26.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 127.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 127.4
Samples: 4

Max nTPM: 130.6
Min nTPM: 123.5
Sample A Male 129.8
Sample B Male 125.5
Sample C Female 123.5
Sample D Female 130.6
Septum
nTPM: 113.2
Samples: 4

Max nTPM: 128.5
Min nTPM: 101.7
Sample A Male 103.7
Sample B Male 118.7
Sample C Female 128.5
Sample D Female 101.7
Ventral forebrain
nTPM: 106.9
Samples: 4

Max nTPM: 122.7
Min nTPM: 97.7
Sample A Male 103.0
Sample B Male 104.3
Sample C Female 122.7
Sample D Female 97.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 3.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 3.0
69169511 Antisense, RP_050321_03_G01, Mouse strain C57BL/6J (56 days, male) 3.0
Pallidum
Expression energy: 2.1
69169511 Antisense, RP_050321_03_G01, Mouse strain C57BL/6J (56 days, male) 2.1

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The Human Protein Atlas

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