MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:33.3 nTPM
HPA:33.3 nTPM
GTEx:38.5 nTPM
FANTOM5:83.1 Scaled Tags Per Million
Pig:38.8 nTPM
Mouse:95.8 nTPM
Allen mouse:2.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 33.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 31.1
1830 Male, age 51, unknown 33.6
1870 Female, age 42, unknown 33.5
2019 Male, age 18, unknown 33.3
1833 Male, age 53, unknown 32.9
2411 Female, age 72, unknown 31.9
1827 Male, age 72, unknown 30.8
2219 Male, age 76, both hemispheres 29.8
2666 Male, age 74, left hemisphere 29.0
2828 Female, age 72, unknown 28.7
2586 Male, age 75, left hemisphere 27.3
Dorsal raphe nucleus
nTPM: 31.4
2016 Female, age 72, unknown 32.6
1828 Male, age 53, unknown 32.1
2298 Female, age 72, unknown 31.2
2750 Male, age 76, both hemispheres 31.1
2047 Male, age 72, unknown 30.2
Inferior colliculus
nTPM: 31.0
2097 Female, age 72, unknown 31.5
1890 Male, age 53, unknown 31.4
1848 Female, age 42, unknown 31.1
2849 Male, age 72, unknown 30.0
Median raphe nucleus
nTPM: 30.2
2220 Male, age 76, midline 30.2
Pedunculopontine tegmental nucleus
nTPM: 33.2
2338 Male, age 61, both hemispheres 36.3
2334 Male, age 80, both hemispheres 33.1
1921 Female, age 85, both hemispheres 30.0
Periaquaductal grey, anterior
nTPM: 31.6
2502 Female, age 75, unknown 34.4
1947 Male, age 18, unknown 30.6
1795 Male, age 51, unknown 29.9
Periaquaductal grey, dorsal
nTPM: 31.1
2850 Male, age 76, both hemispheres 33.5
2464 Female, age 72, unknown 32.0
1840 Male, age 53, unknown 29.5
1831 Male, age 72, unknown 29.4
Periaquaductal grey, lateral
nTPM: 32.2
2272 Male, age 74, both hemispheres 33.8
2140 Male, age 76, both hemispheres 32.0
2053 Male, age 18, unknown 30.8
Pretectal area
nTPM: 31.4
2273 Male, age 74, both hemispheres 35.0
2407 Male, age 75, both hemispheres 32.4
2007 Male, age 72, unknown 31.9
1817 Female, age 42, unknown 31.8
2316 Male, age 76, right hemisphere 31.3
1944 Female, age 72, unknown 31.2
1815 Male, age 53, unknown 30.9
1816 Male, age 51, unknown 30.9
2224 Female, age 72, unknown 30.3
2667 Female, age 75, unknown 30.0
2825 Male, age 18, unknown 29.8
Red nucleus
nTPM: 33.3
1821 Female, age 72, unknown 36.2
2823 Male, age 76, right hemisphere 36.1
1904 Male, age 53, unknown 35.4
1954 Female, age 42, unknown 35.4
1865 Male, age 51, unknown 34.5
2227 Male, age 72, unknown 33.6
2785 Male, age 18, unknown 33.6
2769 Male, age 72, unknown 32.4
2503 Female, age 72, unknown 31.4
2584 Male, age 75, left hemisphere 31.0
2588 Male, age 74, left hemisphere 30.1
2725 Female, age 75, unknown 30.0
Substantia nigra
nTPM: 30.9
2241 Male, age 72, unknown 35.0
2590 Female, age 75, unknown 33.2
1941 Male, age 53, unknown 31.2
2699 Male, age 18, unknown 31.2
2409 Female, age 72, unknown 30.9
1851 Male, age 51, unknown 30.4
2583 Male, age 75, right hemisphere 30.4
1889 Female, age 72, unknown 29.9
1916 Female, age 42, unknown 28.5
2665 Male, age 74, both hemispheres 28.5
Superior colliculus
nTPM: 31.5
1913 Female, age 42, unknown 34.5
2587 Male, age 74, left hemisphere 33.9
1895 Male, age 76, right hemisphere 32.4
2261 Male, age 18, unknown 32.3
1995 Male, age 72, unknown 31.6
1839 Male, age 51, unknown 31.3
2668 Female, age 75, unknown 31.1
2087 Female, age 72, unknown 30.2
2664 Male, age 75, both hemispheres 29.0
1796 Male, age 53, unknown 28.6
Ventral tegmental area
nTPM: 31.5
2223 Female, age 72, unknown 36.1
2021 Male, age 53, unknown 31.2
2218 Male, age 76, both hemispheres 31.0
2410 Female, age 72, unknown 30.9
1942 Male, age 51, unknown 30.6
1915 Female, age 42, unknown 29.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 38.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 38.5
Samples: 139

Max nTPM: 76.2
Min nTPM: 18.3
Std nTPM: 8.4
Median nTPM: 37.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 76.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 69.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 59.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 57.5
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 54.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 53.4
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 53.3
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 53.0
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 52.9
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 52.6
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 51.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 83.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 83.1
FF:10158-103A5 76 years, female 83.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 38.8
Pig sample Sample description nTPM
Midbrain
nTPM: 38.8
Samples: 4

Max nTPM: 67.3
Min nTPM: 21.2
Sample A Female 67.3
Sample B Female 38.7
Sample C Male 28.1
Sample D Male 21.2
Periaqueductal gray
nTPM: 31.6
Samples: 3

Max nTPM: 32.0
Min nTPM: 31.2
Sample B Female 31.6
Sample C Male 31.2
Sample D Male 32.0
Substantia nigra
nTPM: 35.8
Samples: 4

Max nTPM: 44.9
Min nTPM: 31.4
Sample A Female 44.9
Sample B Female 32.9
Sample C Male 31.4
Sample D Male 34.1
Superior colliculi
nTPM: 31.9
Samples: 4

Max nTPM: 34.9
Min nTPM: 29.9
Sample A Female 34.9
Sample B Female 29.9
Sample C Male 31.9
Sample D Male 31.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 95.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 95.8
Samples: 4

Max nTPM: 104.1
Min nTPM: 89.4
Sample A Male 99.5
Sample B Male 90.2
Sample C Female 89.4
Sample D Female 104.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.2
69169511 Antisense, RP_050321_03_G01, Mouse strain C57BL/6J (56 days, male) 2.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.