BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:19.3 nTPM
HPA:19.3 nTPM
GTEx:62.2 nTPM
FANTOM5:19.6 Scaled Tags Per Million
Pig:35.8 nTPM
Mouse:115.6 nTPM
Allen mouse:10.2 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 19.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 14.9
2290 Female, age 72, unknown 19.7
2846 Female, age 79, unknown 15.9
1781 Male, age 74, unknown 15.7
2289 Male, age 61, right hemisphere 15.4
2288 Male, age 75, left hemisphere 14.9
1854 Male, age 80, left hemisphere 13.7
1857 Female, age 85, left hemisphere 13.7
2481 Female, age 94, left hemisphere 9.8
Claustrum
nTPM: 17.3
2568 Male, age 61, both hemispheres 23.6
2491 Male, age 75, both hemispheres 22.2
2645 Female, age 72, unknown 21.7
2284 Female, age 91, both hemispheres 19.2
2198 Male, age 80, both hemispheres 15.6
2392 Female, age 94, both hemispheres 15.3
1956 Male, age 74, unknown 13.9
2292 Female, age 85, both hemispheres 12.8
2196 Female, age 79, unknown 11.7
Globus pallidus, externus
nTPM: 9.3
2772 Female, age 79, unknown 11.4
2567 Female, age 72, unknown 11.2
2646 Male, age 61, right hemisphere 10.3
1996 Male, age 80, right hemisphere 7.5
2395 Male, age 75, both hemispheres 6.2
Globus pallidus, internus
nTPM: 7.6
2566 Female, age 72, unknown 10.1
1818 Male, age 74, unknown 9.6
2483 Female, age 94, right hemisphere 8.5
2037 Male, age 80, right hemisphere 7.2
2778 Female, age 91, both hemispheres 6.5
2111 Female, age 85, right hemisphere 5.9
2287 Male, age 75, right hemisphere 5.5
Nucleus accumbens
nTPM: 14.8
1856 Female, age 91, right hemisphere 18.7
1783 Male, age 74, unknown 18.3
2824 Male, age 61, right hemisphere 18.0
1806 Female, age 85, left hemisphere 15.3
2286 Male, age 75, left hemisphere 15.2
2698 Female, age 72, unknown 12.3
2732 Male, age 80, right hemisphere 11.4
2391 Female, age 94, left hemisphere 8.9
Nucleus basalis of Meynert
nTPM: 13.3
2484 Female, age 94, left hemisphere 14.8
2821 Male, age 75, both hemispheres 13.8
2393 Male, age 80, right hemisphere 13.5
2569 Male, age 61, both hemispheres 10.9
Nucleus of the diagonal band
nTPM: 18.3
2029 Male, age 61, right hemisphere 23.1
2195 Female, age 85, both hemispheres 17.4
2775 Male, age 80, right hemisphere 17.4
1979 Male, age 74, unknown 17.3
1812 Female, age 91, both hemispheres 16.4
Olfactory tubercle
nTPM: 19.3
1998 Female, age 91, both hemispheres 23.6
2856 Male, age 75, right hemisphere 20.3
2487 Female, age 94, left hemisphere 19.4
1846 Male, age 80, right hemisphere 14.1
Putamen
nTPM: 15.4
2647 Male, age 75, left hemisphere 17.2
2489 Female, age 72, unknown 16.9
1829 Male, age 74, unknown 16.8
2466 Female, age 79, unknown 16.5
1838 Male, age 80, right hemisphere 15.4
1937 Female, age 91, right hemisphere 14.8
2482 Female, age 94, left hemisphere 10.6
Septal nuclei
nTPM: 14.7
1960 Male, age 74, unknown 17.1
2059 Female, age 85, both hemispheres 16.4
2394 Male, age 61, left hemisphere 15.2
2031 Female, age 72, unknown 15.1
2009 Female, age 91, both hemispheres 13.9
2629 Female, age 94, right hemisphere 13.3
2199 Male, age 80, right hemisphere 11.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 62.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 60.1
Samples: 246

Max nTPM: 153.3
Min nTPM: 6.0
Std nTPM: 29.4
Median nTPM: 59.5
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 153.3
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 147.5
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 142.6
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 141.0
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 129.6
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 124.7
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 123.0
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 121.4
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 119.0
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 113.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 113.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 62.2
Samples: 246

Max nTPM: 146.7
Min nTPM: 1.3
Std nTPM: 23.6
Median nTPM: 62.1
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 146.7
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 134.0
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 128.8
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 110.7
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 109.9
GTEX-1IDJH-0011-R6a-SM-A9SLZ 70-79 years, male 109.2
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 106.4
GTEX-12WSC-0011-R6b-SM-5LU99 50-59 years, male 104.2
GTEX-18A6Q-0011-R6a-SM-7LG6R 60-69 years, male 104.0
GTEX-1BAJH-0011-R6b-SM-7MXT2 70-79 years, male 103.0
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 98.4
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Brain - Putamen (basal ganglia)
Average nTPM: 59.5
Samples: 205

Max nTPM: 151.6
Min nTPM: 5.7
Std nTPM: 26.7
Median nTPM: 56.8
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 151.6
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 139.9
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 128.8
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 121.6
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 116.2
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 112.3
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 111.9
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 111.5
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 110.2
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 106.2
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 104.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 19.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 18.9
FF:10164-103B2 76 years, female 18.9
Globus pallidus
Scaled Tags Per Million: 3.5
FF:10161-103A8 76 years, female 6.3
FF:10175-103C4 60 years, female 0.7
Nucleus accumbens
Scaled Tags Per Million: 19.6
FF:10037-101F1 23-56 years, mixed 19.6
Putamen
Scaled Tags Per Million: 15.1
FF:10176-103C5 60 years, female 15.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 35.8
Pig sample Sample description nTPM
Caudate
nTPM: 32.6
Samples: 4

Max nTPM: 42.0
Min nTPM: 22.3
Sample A Female 22.3
Sample B Female 32.5
Sample C Male 42.0
Sample D Male 33.4
Putamen
nTPM: 35.8
Samples: 4

Max nTPM: 52.8
Min nTPM: 16.1
Sample A Female 16.1
Sample B Female 32.4
Sample C Male 52.8
Sample D Male 42.0
Septum
nTPM: 30.3
Samples: 4

Max nTPM: 41.2
Min nTPM: 25.2
Sample A Female 27.1
Sample B Female 27.6
Sample C Male 41.2
Sample D Male 25.2
Ventral pallidum
nTPM: 30.5
Samples: 4

Max nTPM: 48.5
Min nTPM: 23.0
Sample A Female 24.0
Sample B Female 26.4
Sample C Male 48.5
Sample D Male 23.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 115.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 103.0
Samples: 4

Max nTPM: 106.0
Min nTPM: 97.6
Sample A Male 103.4
Sample B Male 106.0
Sample C Female 97.6
Sample D Female 105.1
Septum
nTPM: 115.6
Samples: 4

Max nTPM: 123.2
Min nTPM: 107.9
Sample A Male 121.5
Sample B Male 123.2
Sample C Female 109.8
Sample D Female 107.9
Ventral forebrain
nTPM: 109.5
Samples: 4

Max nTPM: 121.0
Min nTPM: 104.3
Sample A Male 106.7
Sample B Male 105.8
Sample C Female 121.0
Sample D Female 104.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 10.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 10.2
71380550 Antisense, RP_050419_04_G06, Mouse strain C57BL/6J (56 days, male) 11.8
76097701 Antisense, RP_060620_02_A06, Mouse strain C57BL/6J (56 days, male) 8.5
Pallidum
Expression energy: 10.0
71380550 Antisense, RP_050419_04_G06, Mouse strain C57BL/6J (56 days, male) 11.5
76097701 Antisense, RP_060620_02_A06, Mouse strain C57BL/6J (56 days, male) 8.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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