MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:39.8 nTPM
HPA:39.8 nTPM
GTEx:52.8 nTPM
FANTOM5:8.3 Scaled Tags Per Million
Pig:23.9 nTPM
Mouse:33.9 nTPM
Allen mouse:2.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 39.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 36.7
1870 Female, age 42, unknown 41.1
1833 Male, age 53, unknown 38.0
2411 Female, age 72, unknown 38.0
2586 Male, age 75, left hemisphere 36.8
2666 Male, age 74, left hemisphere 36.3
1827 Male, age 72, unknown 36.2
1830 Male, age 51, unknown 36.1
2828 Female, age 72, unknown 35.9
2019 Male, age 18, unknown 35.8
2219 Male, age 76, both hemispheres 33.2
Dorsal raphe nucleus
nTPM: 38.0
2047 Male, age 72, unknown 38.8
2298 Female, age 72, unknown 38.2
2016 Female, age 72, unknown 37.8
1828 Male, age 53, unknown 37.7
2750 Male, age 76, both hemispheres 37.6
Inferior colliculus
nTPM: 35.6
2849 Male, age 72, unknown 36.6
2097 Female, age 72, unknown 35.7
1890 Male, age 53, unknown 35.5
1848 Female, age 42, unknown 34.7
Median raphe nucleus
nTPM: 39.8
2220 Male, age 76, midline 39.8
Pedunculopontine tegmental nucleus
nTPM: 37.2
2338 Male, age 61, both hemispheres 39.4
2334 Male, age 80, both hemispheres 38.9
1921 Female, age 85, both hemispheres 33.3
Periaquaductal grey, anterior
nTPM: 37.1
2502 Female, age 75, unknown 38.6
1947 Male, age 18, unknown 37.6
1795 Male, age 51, unknown 35.3
Periaquaductal grey, dorsal
nTPM: 36.7
2850 Male, age 76, both hemispheres 38.9
1840 Male, age 53, unknown 37.8
2464 Female, age 72, unknown 35.1
1831 Male, age 72, unknown 34.9
Periaquaductal grey, lateral
nTPM: 34.9
2140 Male, age 76, both hemispheres 37.3
2053 Male, age 18, unknown 34.4
2272 Male, age 74, both hemispheres 32.9
Pretectal area
nTPM: 36.3
2825 Male, age 18, unknown 39.0
1815 Male, age 53, unknown 37.7
1817 Female, age 42, unknown 37.7
2224 Female, age 72, unknown 37.3
2407 Male, age 75, both hemispheres 36.8
2316 Male, age 76, right hemisphere 36.4
2007 Male, age 72, unknown 36.0
2273 Male, age 74, both hemispheres 35.0
2667 Female, age 75, unknown 34.7
1816 Male, age 51, unknown 34.5
1944 Female, age 72, unknown 34.5
Red nucleus
nTPM: 38.1
1821 Female, age 72, unknown 42.8
1865 Male, age 51, unknown 39.9
2503 Female, age 72, unknown 39.4
1954 Female, age 42, unknown 38.6
1904 Male, age 53, unknown 38.2
2227 Male, age 72, unknown 38.2
2769 Male, age 72, unknown 38.0
2588 Male, age 74, left hemisphere 37.7
2725 Female, age 75, unknown 37.2
2823 Male, age 76, right hemisphere 36.6
2584 Male, age 75, left hemisphere 36.0
2785 Male, age 18, unknown 35.1
Substantia nigra
nTPM: 38.1
2699 Male, age 18, unknown 42.6
1851 Male, age 51, unknown 40.4
2409 Female, age 72, unknown 39.9
1916 Female, age 42, unknown 39.0
2241 Male, age 72, unknown 37.8
2665 Male, age 74, both hemispheres 37.8
2590 Female, age 75, unknown 36.5
1889 Female, age 72, unknown 36.2
2583 Male, age 75, right hemisphere 35.7
1941 Male, age 53, unknown 34.6
Superior colliculus
nTPM: 36.0
2668 Female, age 75, unknown 38.5
1839 Male, age 51, unknown 37.4
2664 Male, age 75, both hemispheres 37.3
1913 Female, age 42, unknown 36.8
1995 Male, age 72, unknown 36.7
2587 Male, age 74, left hemisphere 36.6
1796 Male, age 53, unknown 35.2
1895 Male, age 76, right hemisphere 34.2
2087 Female, age 72, unknown 33.9
2261 Male, age 18, unknown 33.4
Ventral tegmental area
nTPM: 37.5
2223 Female, age 72, unknown 39.3
2021 Male, age 53, unknown 38.0
1915 Female, age 42, unknown 37.8
2218 Male, age 76, both hemispheres 37.7
1942 Male, age 51, unknown 36.4
2410 Female, age 72, unknown 35.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 52.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 52.8
Samples: 139

Max nTPM: 75.0
Min nTPM: 34.9
Std nTPM: 9.2
Median nTPM: 51.9
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 75.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 74.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 73.5
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 73.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 72.2
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 72.2
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 70.2
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 70.2
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 69.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 68.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 68.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 8.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 8.3
FF:10158-103A5 76 years, female 8.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 23.9
Pig sample Sample description nTPM
Midbrain
nTPM: 23.4
Samples: 4

Max nTPM: 33.1
Min nTPM: 17.0
Sample A Female 33.1
Sample B Female 25.4
Sample C Male 17.0
Sample D Male 18.1
Periaqueductal gray
nTPM: 21.3
Samples: 3

Max nTPM: 22.6
Min nTPM: 19.4
Sample B Female 21.9
Sample C Male 22.6
Sample D Male 19.4
Substantia nigra
nTPM: 23.9
Samples: 4

Max nTPM: 28.1
Min nTPM: 20.6
Sample A Female 28.1
Sample B Female 20.6
Sample C Male 25.3
Sample D Male 21.5
Superior colliculi
nTPM: 20.0
Samples: 4

Max nTPM: 23.6
Min nTPM: 16.0
Sample A Female 23.6
Sample B Female 16.0
Sample C Male 18.8
Sample D Male 21.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 33.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 33.9
Samples: 4

Max nTPM: 34.8
Min nTPM: 32.4
Sample A Male 34.8
Sample B Male 33.7
Sample C Female 34.7
Sample D Female 32.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.8
68844379 Antisense, RP_050222_01_E04, Mouse strain C57BL/6J (56 days, male) 2.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.