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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:942.7 nTPM
HPA:942.7 nTPM
GTEx:1185.2 nTPM
FANTOM5:27.4 Scaled Tags Per Million

AMYGDALA - HPA Brain RNA-seq
Max nTPM 942.7
Sample id Sample description nTPM
Amygdala
nTPM: 942.7
2695 Female, age 67, right hemisphere 971.6
2514 Male, age 75, right hemisphere 954.5
1987 Female, age 91, left hemisphere 932.4
2517 Female, age 94, left hemisphere 928.1
2814 Male, age 76, right hemisphere 927.1
Basal amygdala
nTPM: 922.1
2827 Female, age 67, right hemisphere 948.5
2609 Male, age 75, right hemisphere 938.7
2685 Female, age 94, left hemisphere 921.0
2110 Male, age 80, left hemisphere 915.7
2243 Female, age 91, right hemisphere 908.9
1955 Male, age 76, both hemispheres 899.5
Central amygdala
nTPM: 929.8
2826 Female, age 94, left hemisphere 982.6
2515 Male, age 75, right hemisphere 941.1
1905 Male, age 76, both hemispheres 910.7
2239 Male, age 80, left hemisphere 907.2
2701 Female, age 91, right hemisphere 907.2
Corticomedial amygdala
nTPM: 921.7
2428 Male, age 75, right hemisphere 952.3
2535 Female, age 67, right hemisphere 922.7
2829 Male, age 80, left hemisphere 916.0
2242 Female, age 91, right hemisphere 915.6
2240 Male, age 76, both hemispheres 913.4
2429 Female, age 94, left hemisphere 910.6
Lateral amygdala
nTPM: 935.6
2830 Female, age 67, right hemisphere 981.9
2516 Male, age 75, right hemisphere 959.6
2534 Female, age 94, left hemisphere 952.0
2256 Male, age 80, left hemisphere 920.9
2255 Female, age 91, right hemisphere 901.6
1883 Male, age 76, both hemispheres 897.4
Stria terminalis, bed nucleus
nTPM: 913.0
1974 Female, age 91, both hemispheres 929.8
2201 Male, age 74, unknown 906.0
2486 Female, age 94, both hemispheres 903.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1185.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1185.2
Samples: 152

Max nTPM: 4133.4
Min nTPM: 645.7
Std nTPM: 487.5
Median nTPM: 1089.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 4133.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 3351.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 2923.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 2766.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 2664.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 2475.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 2350.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 2022.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 2009.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1927.8
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 1903.7
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 1816.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1749.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1745.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 1665.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1658.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1638.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1587.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 1550.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1540.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 1504.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 1469.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 1411.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1391.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1387.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 1384.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 1379.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1375.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 1336.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1312.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1298.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 1296.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1283.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1271.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1270.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1259.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 1239.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1233.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1225.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 1217.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1214.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1212.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1212.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 1209.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1199.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1199.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1194.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 1189.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1170.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 1168.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1166.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 1165.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1163.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 1162.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 1160.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 1158.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 1158.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 1150.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1149.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 1144.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1143.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 1136.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 1132.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1130.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1125.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 1124.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1119.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 1117.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 1113.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1111.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1109.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 1106.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 1093.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1092.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1091.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1091.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1087.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 1064.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 1058.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 1045.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 1044.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 1036.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 1034.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 1031.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 1028.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 1024.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 1023.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 1018.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 1014.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 1007.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 1002.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 995.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 990.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 990.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 988.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 981.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 980.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 979.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 977.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 973.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 966.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 962.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 959.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 958.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 957.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 947.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 942.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 941.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 939.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 938.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 932.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 929.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 925.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 916.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 915.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 910.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 906.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 905.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 900.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 900.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 899.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 885.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 876.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 873.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 872.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 871.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 868.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 867.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 860.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 859.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 855.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 855.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 842.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 831.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 827.5
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 826.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 818.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 810.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 803.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 797.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 791.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 789.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 758.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 755.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 754.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 731.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 721.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 705.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 688.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 682.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 670.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 645.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 27.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 27.4
FF:10151-102I7 76 years, female 27.4

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