MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:944.3 nTPM
HPA:944.3 nTPM
GTEx:1192.7 nTPM
FANTOM5:34.6 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 944.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 926.9
1870 Female, age 42, unknown 943.4
2666 Male, age 74, left hemisphere 938.9
2586 Male, age 75, left hemisphere 932.9
1833 Male, age 53, unknown 929.5
1827 Male, age 72, unknown 927.9
2219 Male, age 76, both hemispheres 927.4
1830 Male, age 51, unknown 921.8
2411 Female, age 72, unknown 921.7
2828 Female, age 72, unknown 917.5
2019 Male, age 18, unknown 907.7
Dorsal raphe nucleus
nTPM: 933.3
2298 Female, age 72, unknown 959.4
1828 Male, age 53, unknown 928.3
2047 Male, age 72, unknown 928.3
2750 Male, age 76, both hemispheres 925.6
2016 Female, age 72, unknown 924.9
Inferior colliculus
nTPM: 941.3
2849 Male, age 72, unknown 951.3
2097 Female, age 72, unknown 943.4
1890 Male, age 53, unknown 936.2
1848 Female, age 42, unknown 934.2
Median raphe nucleus
nTPM: 926.4
2220 Male, age 76, midline 926.4
Pedunculopontine tegmental nucleus
nTPM: 944.3
2338 Male, age 61, both hemispheres 962.3
2334 Male, age 80, both hemispheres 946.1
1921 Female, age 85, both hemispheres 924.6
Periaquaductal grey, anterior
nTPM: 929.3
2502 Female, age 75, unknown 943.6
1947 Male, age 18, unknown 924.0
1795 Male, age 51, unknown 920.1
Periaquaductal grey, dorsal
nTPM: 931.5
1840 Male, age 53, unknown 951.3
2850 Male, age 76, both hemispheres 926.1
2464 Female, age 72, unknown 924.4
1831 Male, age 72, unknown 924.2
Periaquaductal grey, lateral
nTPM: 915.2
2053 Male, age 18, unknown 925.2
2140 Male, age 76, both hemispheres 914.4
2272 Male, age 74, both hemispheres 906.0
Pretectal area
nTPM: 918.7
2224 Female, age 72, unknown 940.0
2316 Male, age 76, right hemisphere 928.0
1817 Female, age 42, unknown 924.9
2825 Male, age 18, unknown 924.4
1816 Male, age 51, unknown 923.9
2007 Male, age 72, unknown 915.0
1815 Male, age 53, unknown 914.5
2407 Male, age 75, both hemispheres 913.0
1944 Female, age 72, unknown 910.2
2667 Female, age 75, unknown 908.2
2273 Male, age 74, both hemispheres 904.1
Red nucleus
nTPM: 929.3
2503 Female, age 72, unknown 958.9
1821 Female, age 72, unknown 944.0
2584 Male, age 75, left hemisphere 933.6
1865 Male, age 51, unknown 932.5
2725 Female, age 75, unknown 931.9
2769 Male, age 72, unknown 931.1
2227 Male, age 72, unknown 927.2
2588 Male, age 74, left hemisphere 924.7
2785 Male, age 18, unknown 921.1
1904 Male, age 53, unknown 920.9
1954 Female, age 42, unknown 914.8
2823 Male, age 76, right hemisphere 910.7
Substantia nigra
nTPM: 930.6
2699 Male, age 18, unknown 955.4
1851 Male, age 51, unknown 948.6
2665 Male, age 74, both hemispheres 945.8
2241 Male, age 72, unknown 934.3
2590 Female, age 75, unknown 928.8
1916 Female, age 42, unknown 926.1
1889 Female, age 72, unknown 921.7
1941 Male, age 53, unknown 919.4
2409 Female, age 72, unknown 919.4
2583 Male, age 75, right hemisphere 906.5
Superior colliculus
nTPM: 930.0
2587 Male, age 74, left hemisphere 950.3
1796 Male, age 53, unknown 938.6
1895 Male, age 76, right hemisphere 935.7
1913 Female, age 42, unknown 932.8
2664 Male, age 75, both hemispheres 928.7
1995 Male, age 72, unknown 928.3
1839 Male, age 51, unknown 928.0
2668 Female, age 75, unknown 925.0
2261 Male, age 18, unknown 922.7
2087 Female, age 72, unknown 909.9
Ventral tegmental area
nTPM: 932.0
1915 Female, age 42, unknown 946.3
2223 Female, age 72, unknown 934.8
2021 Male, age 53, unknown 933.4
2410 Female, age 72, unknown 932.5
2218 Male, age 76, both hemispheres 925.0
1942 Male, age 51, unknown 920.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1192.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1192.7
Samples: 139

Max nTPM: 3127.6
Min nTPM: 550.6
Std nTPM: 418.5
Median nTPM: 1129.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 3127.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 2955.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 2632.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 2564.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2270.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 2072.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1908.3
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 1827.7
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 1807.8
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1806.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 1780.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 34.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 34.6
FF:10158-103A5 76 years, female 34.6

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