BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:99.8 nTPM
HPA:99.8 nTPM
GTEx:77.7 nTPM
FANTOM5:44.9 Scaled Tags Per Million
Pig:31.9 nTPM
Mouse:43.2 nTPM
Allen mouse:1.7 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 99.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 96.0
1857 Female, age 85, left hemisphere 100.1
1781 Male, age 74, unknown 99.6
2846 Female, age 79, unknown 98.2
2290 Female, age 72, unknown 96.1
1854 Male, age 80, left hemisphere 94.9
2288 Male, age 75, left hemisphere 94.2
2289 Male, age 61, right hemisphere 94.1
2481 Female, age 94, left hemisphere 91.1
Claustrum
nTPM: 98.2
2645 Female, age 72, unknown 110.0
2568 Male, age 61, both hemispheres 102.5
2292 Female, age 85, both hemispheres 101.6
2284 Female, age 91, both hemispheres 99.3
2198 Male, age 80, both hemispheres 98.1
2491 Male, age 75, both hemispheres 95.5
1956 Male, age 74, unknown 94.2
2196 Female, age 79, unknown 93.5
2392 Female, age 94, both hemispheres 89.5
Globus pallidus, externus
nTPM: 97.8
2567 Female, age 72, unknown 108.2
2646 Male, age 61, right hemisphere 100.5
2772 Female, age 79, unknown 95.9
2395 Male, age 75, both hemispheres 92.5
1996 Male, age 80, right hemisphere 91.9
Globus pallidus, internus
nTPM: 96.1
2566 Female, age 72, unknown 102.3
1818 Male, age 74, unknown 97.2
2111 Female, age 85, right hemisphere 97.1
2037 Male, age 80, right hemisphere 96.1
2287 Male, age 75, right hemisphere 94.4
2778 Female, age 91, both hemispheres 93.9
2483 Female, age 94, right hemisphere 91.6
Nucleus accumbens
nTPM: 93.7
1783 Male, age 74, unknown 100.9
1806 Female, age 85, left hemisphere 98.8
2824 Male, age 61, right hemisphere 95.7
1856 Female, age 91, right hemisphere 94.5
2286 Male, age 75, left hemisphere 92.6
2698 Female, age 72, unknown 91.6
2732 Male, age 80, right hemisphere 89.6
2391 Female, age 94, left hemisphere 86.2
Nucleus basalis of Meynert
nTPM: 96.0
2569 Male, age 61, both hemispheres 105.2
2484 Female, age 94, left hemisphere 96.4
2821 Male, age 75, both hemispheres 92.6
2393 Male, age 80, right hemisphere 90.0
Nucleus of the diagonal band
nTPM: 93.9
2029 Male, age 61, right hemisphere 98.8
2775 Male, age 80, right hemisphere 95.4
2195 Female, age 85, both hemispheres 93.9
1812 Female, age 91, both hemispheres 92.3
1979 Male, age 74, unknown 89.1
Olfactory tubercle
nTPM: 92.7
1998 Female, age 91, both hemispheres 94.8
2487 Female, age 94, left hemisphere 92.5
2856 Male, age 75, right hemisphere 91.8
1846 Male, age 80, right hemisphere 91.7
Putamen
nTPM: 99.8
2647 Male, age 75, left hemisphere 111.1
2489 Female, age 72, unknown 105.3
1829 Male, age 74, unknown 102.6
2466 Female, age 79, unknown 102.4
1937 Female, age 91, right hemisphere 94.5
1838 Male, age 80, right hemisphere 93.2
2482 Female, age 94, left hemisphere 89.3
Septal nuclei
nTPM: 92.1
2394 Male, age 61, left hemisphere 96.5
1960 Male, age 74, unknown 96.2
2059 Female, age 85, both hemispheres 92.8
2031 Female, age 72, unknown 92.2
2009 Female, age 91, both hemispheres 90.3
2629 Female, age 94, right hemisphere 89.2
2199 Male, age 80, right hemisphere 87.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 77.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 69.9
Samples: 246

Max nTPM: 126.0
Min nTPM: 31.4
Std nTPM: 15.3
Median nTPM: 68.8
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 126.0
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 120.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 108.1
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 104.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 104.6
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 103.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 102.3
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 101.4
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 101.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 100.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 99.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 72.5
Samples: 246

Max nTPM: 217.0
Min nTPM: 22.0
Std nTPM: 21.6
Median nTPM: 69.4
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 217.0
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 138.6
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 137.0
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 135.7
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 128.8
GTEX-1HBPM-0011-R6b-SM-ARU73 60-69 years, female 128.0
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 120.4
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 118.2
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 117.4
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 115.9
GTEX-1C64N-0011-R6a-SM-7IGO9 50-59 years, male 115.0
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Brain - Putamen (basal ganglia)
Average nTPM: 77.7
Samples: 205

Max nTPM: 144.7
Min nTPM: 39.1
Std nTPM: 17.1
Median nTPM: 75.4
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 144.7
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 136.7
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 125.1
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 119.0
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 117.5
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 117.0
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 115.0
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 111.6
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 108.4
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 107.7
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 107.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 44.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 35.8
FF:10164-103B2 76 years, female 35.8
Globus pallidus
Scaled Tags Per Million: 39.8
FF:10175-103C4 60 years, female 48.1
FF:10161-103A8 76 years, female 31.6
Nucleus accumbens
Scaled Tags Per Million: 36.8
FF:10037-101F1 23-56 years, mixed 36.8
Putamen
Scaled Tags Per Million: 44.9
FF:10176-103C5 60 years, female 44.9

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 31.9
Pig sample Sample description nTPM
Caudate
nTPM: 32.0
Samples: 4

Max nTPM: 37.5
Min nTPM: 24.6
Sample A Female 24.6
Sample B Female 37.3
Sample C Male 37.5
Sample D Male 28.4
Putamen
nTPM: 31.6
Samples: 4

Max nTPM: 38.9
Min nTPM: 18.9
Sample A Female 18.9
Sample B Female 32.1
Sample C Male 38.9
Sample D Male 36.4
Septum
nTPM: 27.8
Samples: 4

Max nTPM: 31.4
Min nTPM: 23.8
Sample A Female 29.6
Sample B Female 31.4
Sample C Male 23.8
Sample D Male 26.2
Ventral pallidum
nTPM: 28.1
Samples: 4

Max nTPM: 34.9
Min nTPM: 24.5
Sample A Female 24.5
Sample B Female 34.9
Sample C Male 27.1
Sample D Male 25.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 43.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 40.7
Samples: 4

Max nTPM: 54.2
Min nTPM: 33.0
Sample A Male 39.6
Sample B Male 54.2
Sample C Female 33.0
Sample D Female 36.0
Septum
nTPM: 37.7
Samples: 4

Max nTPM: 43.6
Min nTPM: 34.0
Sample A Male 43.6
Sample B Male 37.0
Sample C Female 36.0
Sample D Female 34.0
Ventral forebrain
nTPM: 43.2
Samples: 4

Max nTPM: 50.2
Min nTPM: 37.0
Sample A Male 47.7
Sample B Male 37.8
Sample C Female 50.2
Sample D Female 37.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.7
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.7
67815539 Antisense, RP_040920_01_G09, Mouse strain C57BL/6J (56 days, male) 1.7
Pallidum
Expression energy: 1.7
67815539 Antisense, RP_040920_01_G09, Mouse strain C57BL/6J (56 days, male) 1.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
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