BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:118.7 nTPM
HPA:118.7 nTPM
GTEx:52.8 nTPM
FANTOM5:37.1 Scaled Tags Per Million

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 118.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 107.4
2288 Male, age 75, left hemisphere 115.1
2289 Male, age 61, right hemisphere 109.7
2481 Female, age 94, left hemisphere 109.2
2846 Female, age 79, unknown 107.0
2290 Female, age 72, unknown 106.3
1857 Female, age 85, left hemisphere 106.2
1854 Male, age 80, left hemisphere 103.2
1781 Male, age 74, unknown 102.4
Claustrum
nTPM: 102.9
2568 Male, age 61, both hemispheres 110.1
2292 Female, age 85, both hemispheres 103.6
2284 Female, age 91, both hemispheres 102.9
2645 Female, age 72, unknown 102.8
2196 Female, age 79, unknown 102.1
2392 Female, age 94, both hemispheres 102.1
2491 Male, age 75, both hemispheres 101.3
2198 Male, age 80, both hemispheres 100.7
1956 Male, age 74, unknown 100.1
Globus pallidus, externus
nTPM: 109.8
2646 Male, age 61, right hemisphere 116.8
2567 Female, age 72, unknown 112.9
1996 Male, age 80, right hemisphere 109.3
2772 Female, age 79, unknown 107.1
2395 Male, age 75, both hemispheres 102.8
Globus pallidus, internus
nTPM: 108.5
1818 Male, age 74, unknown 113.7
2483 Female, age 94, right hemisphere 112.3
2037 Male, age 80, right hemisphere 109.7
2778 Female, age 91, both hemispheres 107.6
2287 Male, age 75, right hemisphere 107.4
2566 Female, age 72, unknown 105.8
2111 Female, age 85, right hemisphere 103.3
Nucleus accumbens
nTPM: 104.8
2286 Male, age 75, left hemisphere 112.0
2824 Male, age 61, right hemisphere 105.9
2391 Female, age 94, left hemisphere 105.6
1783 Male, age 74, unknown 105.3
2698 Female, age 72, unknown 103.0
2732 Male, age 80, right hemisphere 102.9
1806 Female, age 85, left hemisphere 102.8
1856 Female, age 91, right hemisphere 101.0
Nucleus basalis of Meynert
nTPM: 118.7
2821 Male, age 75, both hemispheres 139.0
2569 Male, age 61, both hemispheres 119.1
2484 Female, age 94, left hemisphere 108.8
2393 Male, age 80, right hemisphere 108.0
Nucleus of the diagonal band
nTPM: 100.0
2029 Male, age 61, right hemisphere 104.9
1979 Male, age 74, unknown 99.8
2775 Male, age 80, right hemisphere 99.0
2195 Female, age 85, both hemispheres 98.3
1812 Female, age 91, both hemispheres 98.1
Olfactory tubercle
nTPM: 101.6
2856 Male, age 75, right hemisphere 106.0
1846 Male, age 80, right hemisphere 102.7
1998 Female, age 91, both hemispheres 100.0
2487 Female, age 94, left hemisphere 97.8
Putamen
nTPM: 110.7
2647 Male, age 75, left hemisphere 119.3
2489 Female, age 72, unknown 114.2
1838 Male, age 80, right hemisphere 111.8
1829 Male, age 74, unknown 109.4
2466 Female, age 79, unknown 109.2
2482 Female, age 94, left hemisphere 107.2
1937 Female, age 91, right hemisphere 103.6
Septal nuclei
nTPM: 99.8
2031 Female, age 72, unknown 103.2
2199 Male, age 80, right hemisphere 102.2
2394 Male, age 61, left hemisphere 101.8
2009 Female, age 91, both hemispheres 98.2
1960 Male, age 74, unknown 98.0
2059 Female, age 85, both hemispheres 97.7
2629 Female, age 94, right hemisphere 97.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 52.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 36.6
Samples: 246

Max nTPM: 191.6
Min nTPM: 2.2
Std nTPM: 28.3
Median nTPM: 28.6
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 191.6
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 163.1
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 147.7
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 130.5
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 117.6
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 114.8
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 110.1
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 104.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 96.7
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 95.6
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 92.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 24.6
Samples: 246

Max nTPM: 217.1
Min nTPM: 1.2
Std nTPM: 24.1
Median nTPM: 17.8
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 217.1
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 173.8
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 135.6
GTEX-1EWIQ-0011-R6a-SM-ARU8G 70-79 years, female 93.1
GTEX-1IL2U-0011-R6a-SM-ARZLG 60-69 years, male 90.9
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 87.9
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 87.6
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 80.2
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 72.8
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 66.2
GTEX-1H4P4-0011-R6a-SM-ARZLR 50-59 years, male 64.3
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Brain - Putamen (basal ganglia)
Average nTPM: 52.8
Samples: 205

Max nTPM: 233.2
Min nTPM: 1.4
Std nTPM: 39.1
Median nTPM: 43.0
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 233.2
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 217.8
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 194.0
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 154.3
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 145.0
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 144.4
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 136.8
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 133.2
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 132.2
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 132.2
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 130.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 37.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 2.4
FF:10164-103B2 76 years, female 2.4
Globus pallidus
Scaled Tags Per Million: 11.2
FF:10175-103C4 60 years, female 17.3
FF:10161-103A8 76 years, female 5.0
Nucleus accumbens
Scaled Tags Per Million: 37.1
FF:10037-101F1 23-56 years, mixed 37.1
Putamen
Scaled Tags Per Million: 6.3
FF:10176-103C5 60 years, female 6.3

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