MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:107.4 nTPM
HPA:107.4 nTPM
GTEx:45.3 nTPM
FANTOM5:18.1 Scaled Tags Per Million

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 107.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 105.4
2219 Male, age 76, both hemispheres 115.6
2666 Male, age 74, left hemisphere 112.4
2828 Female, age 72, unknown 107.2
1870 Female, age 42, unknown 107.1
2019 Male, age 18, unknown 104.1
1830 Male, age 51, unknown 104.0
2411 Female, age 72, unknown 102.6
1833 Male, age 53, unknown 101.9
1827 Male, age 72, unknown 101.7
2586 Male, age 75, left hemisphere 97.0
Dorsal raphe nucleus
nTPM: 100.9
1828 Male, age 53, unknown 103.4
2047 Male, age 72, unknown 102.7
2016 Female, age 72, unknown 100.1
2298 Female, age 72, unknown 99.2
2750 Male, age 76, both hemispheres 99.0
Inferior colliculus
nTPM: 104.3
1890 Male, age 53, unknown 107.5
2849 Male, age 72, unknown 103.9
2097 Female, age 72, unknown 103.3
1848 Female, age 42, unknown 102.6
Median raphe nucleus
nTPM: 99.7
2220 Male, age 76, midline 99.7
Pedunculopontine tegmental nucleus
nTPM: 103.1
2338 Male, age 61, both hemispheres 105.8
1921 Female, age 85, both hemispheres 102.2
2334 Male, age 80, both hemispheres 101.3
Periaquaductal grey, anterior
nTPM: 100.5
1947 Male, age 18, unknown 101.1
1795 Male, age 51, unknown 100.3
2502 Female, age 75, unknown 100.1
Periaquaductal grey, dorsal
nTPM: 100.0
2464 Female, age 72, unknown 102.8
1831 Male, age 72, unknown 100.1
2850 Male, age 76, both hemispheres 99.6
1840 Male, age 53, unknown 97.6
Periaquaductal grey, lateral
nTPM: 101.0
2053 Male, age 18, unknown 101.9
2272 Male, age 74, both hemispheres 101.3
2140 Male, age 76, both hemispheres 99.7
Pretectal area
nTPM: 102.3
1817 Female, age 42, unknown 106.8
2667 Female, age 75, unknown 105.1
2007 Male, age 72, unknown 104.7
1815 Male, age 53, unknown 104.6
1816 Male, age 51, unknown 102.5
1944 Female, age 72, unknown 102.1
2224 Female, age 72, unknown 101.0
2407 Male, age 75, both hemispheres 100.2
2273 Male, age 74, both hemispheres 99.6
2316 Male, age 76, right hemisphere 99.4
2825 Male, age 18, unknown 99.2
Red nucleus
nTPM: 107.4
2588 Male, age 74, left hemisphere 115.5
1821 Female, age 72, unknown 111.9
1954 Female, age 42, unknown 111.6
2769 Male, age 72, unknown 109.1
1904 Male, age 53, unknown 108.3
2227 Male, age 72, unknown 107.2
2785 Male, age 18, unknown 107.2
1865 Male, age 51, unknown 106.0
2823 Male, age 76, right hemisphere 105.9
2503 Female, age 72, unknown 105.8
2584 Male, age 75, left hemisphere 101.2
2725 Female, age 75, unknown 99.6
Substantia nigra
nTPM: 102.0
2665 Male, age 74, both hemispheres 109.6
2699 Male, age 18, unknown 108.2
1889 Female, age 72, unknown 102.6
1851 Male, age 51, unknown 102.5
1916 Female, age 42, unknown 101.2
2590 Female, age 75, unknown 100.6
1941 Male, age 53, unknown 99.6
2241 Male, age 72, unknown 99.6
2409 Female, age 72, unknown 98.8
2583 Male, age 75, right hemisphere 97.7
Superior colliculus
nTPM: 102.8
2668 Female, age 75, unknown 109.8
2587 Male, age 74, left hemisphere 106.7
2087 Female, age 72, unknown 104.0
1895 Male, age 76, right hemisphere 102.8
1839 Male, age 51, unknown 102.2
1913 Female, age 42, unknown 101.8
2664 Male, age 75, both hemispheres 101.0
1995 Male, age 72, unknown 100.6
1796 Male, age 53, unknown 100.4
2261 Male, age 18, unknown 99.0
Ventral tegmental area
nTPM: 101.8
2021 Male, age 53, unknown 103.5
1915 Female, age 42, unknown 102.5
2223 Female, age 72, unknown 101.7
2218 Male, age 76, both hemispheres 101.6
1942 Male, age 51, unknown 101.3
2410 Female, age 72, unknown 100.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 45.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 45.3
Samples: 139

Max nTPM: 281.6
Min nTPM: 1.5
Std nTPM: 37.4
Median nTPM: 36.8
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 281.6
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 177.7
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 149.2
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 134.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 133.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 126.6
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 115.3
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 113.2
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 111.2
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 101.9
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 101.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 18.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 18.1
FF:10158-103A5 76 years, female 18.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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