BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: High
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:33.1 nTPM
HPA:33.1 nTPM
GTEx:49.0 nTPM
FANTOM5:2.7 Scaled Tags Per Million

CAUDATE - Antibody stainingi
Antibody HPA044833Antibody HPA052083
Glial cells HighMedium
Neuronal cells HighHigh





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 33.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 30.9
2481 Female, age 94, left hemisphere 36.8
2846 Female, age 79, unknown 33.5
1854 Male, age 80, left hemisphere 33.4
2288 Male, age 75, left hemisphere 30.9
2289 Male, age 61, right hemisphere 29.8
2290 Female, age 72, unknown 29.1
1857 Female, age 85, left hemisphere 27.1
1781 Male, age 74, unknown 27.0
Claustrum
nTPM: 29.9
1956 Male, age 74, unknown 32.5
2392 Female, age 94, both hemispheres 32.1
2198 Male, age 80, both hemispheres 31.7
2491 Male, age 75, both hemispheres 31.0
2284 Female, age 91, both hemispheres 29.9
2568 Male, age 61, both hemispheres 28.8
2196 Female, age 79, unknown 28.5
2292 Female, age 85, both hemispheres 27.4
2645 Female, age 72, unknown 27.0
Globus pallidus, externus
nTPM: 31.0
1996 Male, age 80, right hemisphere 32.4
2646 Male, age 61, right hemisphere 31.6
2395 Male, age 75, both hemispheres 31.4
2567 Female, age 72, unknown 31.3
2772 Female, age 79, unknown 28.2
Globus pallidus, internus
nTPM: 33.1
2111 Female, age 85, right hemisphere 36.4
2778 Female, age 91, both hemispheres 34.9
1818 Male, age 74, unknown 33.9
2566 Female, age 72, unknown 33.5
2287 Male, age 75, right hemisphere 32.1
2037 Male, age 80, right hemisphere 30.7
2483 Female, age 94, right hemisphere 30.3
Nucleus accumbens
nTPM: 30.8
2391 Female, age 94, left hemisphere 34.4
2286 Male, age 75, left hemisphere 33.7
2732 Male, age 80, right hemisphere 31.4
1783 Male, age 74, unknown 30.8
1856 Female, age 91, right hemisphere 30.6
2698 Female, age 72, unknown 29.6
2824 Male, age 61, right hemisphere 28.4
1806 Female, age 85, left hemisphere 27.8
Nucleus basalis of Meynert
nTPM: 31.5
2821 Male, age 75, both hemispheres 33.4
2393 Male, age 80, right hemisphere 32.0
2569 Male, age 61, both hemispheres 30.4
2484 Female, age 94, left hemisphere 30.0
Nucleus of the diagonal band
nTPM: 30.8
1812 Female, age 91, both hemispheres 33.8
2775 Male, age 80, right hemisphere 31.1
1979 Male, age 74, unknown 30.5
2195 Female, age 85, both hemispheres 29.6
2029 Male, age 61, right hemisphere 28.9
Olfactory tubercle
nTPM: 29.0
2856 Male, age 75, right hemisphere 31.4
1846 Male, age 80, right hemisphere 29.1
1998 Female, age 91, both hemispheres 28.7
2487 Female, age 94, left hemisphere 26.8
Putamen
nTPM: 32.4
2482 Female, age 94, left hemisphere 36.4
1838 Male, age 80, right hemisphere 34.3
1829 Male, age 74, unknown 32.5
1937 Female, age 91, right hemisphere 32.2
2466 Female, age 79, unknown 31.1
2489 Female, age 72, unknown 30.3
2647 Male, age 75, left hemisphere 30.1
Septal nuclei
nTPM: 30.0
2031 Female, age 72, unknown 32.1
2199 Male, age 80, right hemisphere 31.4
2059 Female, age 85, both hemispheres 30.7
2394 Male, age 61, left hemisphere 29.2
1960 Male, age 74, unknown 29.0
2009 Female, age 91, both hemispheres 28.9
2629 Female, age 94, right hemisphere 28.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 49.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 42.4
Samples: 246

Max nTPM: 91.4
Min nTPM: 8.4
Std nTPM: 13.8
Median nTPM: 42.7
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 91.4
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 84.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 79.5
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 78.5
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 78.2
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 75.1
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 74.9
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 72.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 72.4
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 70.7
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 67.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 41.6
Samples: 246

Max nTPM: 82.3
Min nTPM: 9.4
Std nTPM: 13.8
Median nTPM: 39.3
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 82.3
GTEX-17MF6-0011-R6b-SM-7LG6G 40-49 years, male 79.3
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 77.2
GTEX-1BAJH-0011-R6b-SM-7MXT2 70-79 years, male 75.4
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 72.6
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 72.2
GTEX-1E1VI-0011-R6a-SM-9OSVJ 50-59 years, male 71.6
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 71.6
GTEX-1N2DW-0011-R6a-SM-EZ6MW 50-59 years, male 71.3
GTEX-11TTK-0011-R6b-SM-DNZZW 60-69 years, female 71.0
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 69.2
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Brain - Putamen (basal ganglia)
Average nTPM: 49.0
Samples: 205

Max nTPM: 86.3
Min nTPM: 0.4
Std nTPM: 13.9
Median nTPM: 47.6
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 86.3
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 86.3
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 84.7
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 84.0
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 82.4
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 82.0
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 81.7
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 81.3
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 79.9
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 76.0
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 76.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 2.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 0.1
FF:10164-103B2 76 years, female 0.1
Globus pallidus
Scaled Tags Per Million: 2.7
FF:10175-103C4 60 years, female 5.5
FF:10161-103A8 76 years, female 0.0
Nucleus accumbens
Scaled Tags Per Million: 2.5
FF:10037-101F1 23-56 years, mixed 2.5
Putamen
Scaled Tags Per Million: 1.8
FF:10176-103C5 60 years, female 1.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
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