MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:32.9 nTPM
HPA:32.9 nTPM
GTEx:46.4 nTPM
FANTOM5:0.0 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 32.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 30.2
1827 Male, age 72, unknown 33.7
2666 Male, age 74, left hemisphere 32.4
2828 Female, age 72, unknown 31.7
1830 Male, age 51, unknown 31.6
1833 Male, age 53, unknown 30.5
1870 Female, age 42, unknown 29.9
2411 Female, age 72, unknown 28.6
2219 Male, age 76, both hemispheres 28.3
2586 Male, age 75, left hemisphere 28.3
2019 Male, age 18, unknown 27.4
Dorsal raphe nucleus
nTPM: 32.0
1828 Male, age 53, unknown 34.6
2750 Male, age 76, both hemispheres 34.5
2047 Male, age 72, unknown 32.5
2016 Female, age 72, unknown 31.1
2298 Female, age 72, unknown 27.1
Inferior colliculus
nTPM: 31.6
1848 Female, age 42, unknown 32.5
2097 Female, age 72, unknown 32.4
1890 Male, age 53, unknown 31.2
2849 Male, age 72, unknown 30.4
Median raphe nucleus
nTPM: 29.0
2220 Male, age 76, midline 29.0
Pedunculopontine tegmental nucleus
nTPM: 32.9
1921 Female, age 85, both hemispheres 35.1
2334 Male, age 80, both hemispheres 32.0
2338 Male, age 61, both hemispheres 31.5
Periaquaductal grey, anterior
nTPM: 28.1
2502 Female, age 75, unknown 28.7
1795 Male, age 51, unknown 28.1
1947 Male, age 18, unknown 27.4
Periaquaductal grey, dorsal
nTPM: 31.4
2850 Male, age 76, both hemispheres 31.9
1840 Male, age 53, unknown 31.8
2464 Female, age 72, unknown 31.0
1831 Male, age 72, unknown 30.8
Periaquaductal grey, lateral
nTPM: 31.9
2053 Male, age 18, unknown 34.5
2272 Male, age 74, both hemispheres 31.2
2140 Male, age 76, both hemispheres 29.9
Pretectal area
nTPM: 31.4
1817 Female, age 42, unknown 37.8
2316 Male, age 76, right hemisphere 37.1
2273 Male, age 74, both hemispheres 31.9
1816 Male, age 51, unknown 31.8
1815 Male, age 53, unknown 31.7
1944 Female, age 72, unknown 31.6
2007 Male, age 72, unknown 30.1
2825 Male, age 18, unknown 30.0
2407 Male, age 75, both hemispheres 28.9
2224 Female, age 72, unknown 27.7
2667 Female, age 75, unknown 27.3
Red nucleus
nTPM: 31.4
2503 Female, age 72, unknown 34.9
1954 Female, age 42, unknown 33.2
2227 Male, age 72, unknown 32.9
1904 Male, age 53, unknown 32.3
2588 Male, age 74, left hemisphere 32.2
2725 Female, age 75, unknown 32.1
2823 Male, age 76, right hemisphere 31.4
2584 Male, age 75, left hemisphere 31.3
1821 Female, age 72, unknown 29.4
2785 Male, age 18, unknown 29.2
1865 Male, age 51, unknown 29.1
2769 Male, age 72, unknown 28.6
Substantia nigra
nTPM: 31.2
2590 Female, age 75, unknown 36.6
2699 Male, age 18, unknown 35.1
2409 Female, age 72, unknown 32.9
2665 Male, age 74, both hemispheres 31.9
2583 Male, age 75, right hemisphere 31.2
1851 Male, age 51, unknown 30.9
2241 Male, age 72, unknown 29.9
1941 Male, age 53, unknown 29.7
1916 Female, age 42, unknown 27.6
1889 Female, age 72, unknown 26.8
Superior colliculus
nTPM: 30.5
1913 Female, age 42, unknown 34.4
2261 Male, age 18, unknown 32.2
2587 Male, age 74, left hemisphere 31.9
1995 Male, age 72, unknown 31.0
1895 Male, age 76, right hemisphere 30.7
2087 Female, age 72, unknown 30.5
2664 Male, age 75, both hemispheres 29.5
2668 Female, age 75, unknown 29.0
1839 Male, age 51, unknown 28.7
1796 Male, age 53, unknown 27.4
Ventral tegmental area
nTPM: 29.7
1942 Male, age 51, unknown 31.0
2218 Male, age 76, both hemispheres 30.8
2223 Female, age 72, unknown 30.5
2021 Male, age 53, unknown 29.8
2410 Female, age 72, unknown 28.9
1915 Female, age 42, unknown 27.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 46.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 46.4
Samples: 139

Max nTPM: 133.5
Min nTPM: 9.7
Std nTPM: 18.3
Median nTPM: 43.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 133.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 94.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 90.9
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 82.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 81.0
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 80.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 80.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 79.1
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 76.2
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 74.6
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 74.4
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 0.0
FF:10158-103A5 76 years, female 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.