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AL121900.1
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  • AL121900.1
BRAIN HIPPOCAMPAL FORMATION Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Hippocampal formation
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:16.2 nTPM
HPA:16.2 nTPM
FANTOM5:79.5 Scaled Tags Per Million

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA040981
Glial cells Not detected
Neuronal cells Low



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 16.2
Sample id Sample description nTPM
Hippocampus
nTPM: 14.9
1898 Male, age 80, left hemisphere 17.8
2529 Female, age 94, left hemisphere 16.6
2621 Female, age 67, right hemisphere 14.4
1911 Female, age 85, right hemisphere 13.9
1855 Male, age 76, left hemisphere 13.6
2148 Female, age 91, left hemisphere 13.0
Dentate gyrus
nTPM: 15.1
1927 Female, age 91, both hemispheres 18.0
2010 Male, age 76, both hemispheres 15.5
2530 Female, age 94, left hemisphere 15.0
2246 Female, age 85, both hemispheres 14.8
2531 Female, age 67, both hemispheres 14.6
2528 Male, age 74, both hemispheres 12.9
Entorhinal gyrus
nTPM: 13.8
2764 Male, age 80, right hemisphere 16.4
1938 Female, age 85, left hemisphere 15.3
1787 Male, age 76, left hemisphere 14.2
2613 Female, age 94, left hemisphere 13.2
2117 Female, age 91, right hemisphere 12.6
2686 Male, age 75, right hemisphere 11.1
Hippocampus, CA1
nTPM: 16.0
2749 Male, age 80, left hemisphere 21.7
1873 Female, age 85, both hemispheres 16.2
2045 Male, age 76, both hemispheres 14.5
2527 Male, age 74, both hemispheres 14.1
2082 Female, age 91, right hemisphere 13.4
Hippocampus, CA2
nTPM: 15.1
1892 Male, age 76, both hemispheres 16.8
2249 Male, age 74, both hemispheres 16.4
2437 Female, age 94, left hemisphere 16.4
1963 Male, age 80, left hemisphere 15.1
1940 Female, age 85, left hemisphere 13.3
2113 Female, age 91, right hemisphere 12.8
Hippocampus, CA3
nTPM: 15.1
2137 Male, age 80, left hemisphere 19.6
1867 Male, age 76, both hemispheres 16.2
2436 Male, age 74, both hemispheres 16.0
1891 Female, age 85, both hemispheres 15.2
2620 Female, age 94, left hemisphere 13.0
2861 Female, age 67, both hemispheres 10.6
Parahippocampal cortex
nTPM: 13.9
1850 Male, age 80, both hemispheres 16.6
1933 Female, age 85, both hemispheres 16.1
2250 Female, age 67, right hemisphere 15.9
2245 Female, age 91, both hemispheres 15.7
1990 Female, age 91, right hemisphere 15.0
2018 Male, age 76, both hemispheres 14.2
2693 Female, age 94, both hemispheres 13.0
2532 Female, age 72, left hemisphere 11.5
2692 Male, age 74, both hemispheres 11.0
2622 Female, age 67, right hemisphere 10.4
Perirhinal gyrus
nTPM: 16.2
1847 Female, age 91, left hemisphere 17.8
2521 Female, age 94, right hemisphere 16.6
1794 Male, age 80, right hemisphere 16.3
1841 Female, age 85, right hemisphere 16.2
2848 Male, age 76, right hemisphere 14.1
Subiculum
nTPM: 14.5
2438 Female, age 94, left hemisphere 17.6
1977 Female, age 85, both hemispheres 16.1
1901 Male, age 80, both hemispheres 16.0
2619 Male, age 74, both hemispheres 13.0
2729 Female, age 91, right hemisphere 12.3
2042 Male, age 76, both hemispheres 12.2

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 79.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 79.5
FF:10169-103B7 60 years, female 96.2
FF:10153-102I9 76 years, female 62.7

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