MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:16.0 nTPM
HPA:16.0 nTPM
FANTOM5:68.3 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 16.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 13.2
1870 Female, age 42, unknown 16.0
2411 Female, age 72, unknown 15.6
1827 Male, age 72, unknown 15.4
2219 Male, age 76, both hemispheres 13.9
1833 Male, age 53, unknown 13.3
1830 Male, age 51, unknown 13.1
2019 Male, age 18, unknown 13.0
2828 Female, age 72, unknown 12.0
2586 Male, age 75, left hemisphere 10.3
2666 Male, age 74, left hemisphere 9.7
Dorsal raphe nucleus
nTPM: 13.9
2298 Female, age 72, unknown 16.1
2750 Male, age 76, both hemispheres 15.7
2047 Male, age 72, unknown 13.3
1828 Male, age 53, unknown 12.5
2016 Female, age 72, unknown 11.8
Inferior colliculus
nTPM: 14.2
2097 Female, age 72, unknown 15.3
1848 Female, age 42, unknown 15.0
2849 Male, age 72, unknown 13.5
1890 Male, age 53, unknown 12.8
Median raphe nucleus
nTPM: 15.7
2220 Male, age 76, midline 15.7
Pedunculopontine tegmental nucleus
nTPM: 16.0
2334 Male, age 80, both hemispheres 16.7
1921 Female, age 85, both hemispheres 15.9
2338 Male, age 61, both hemispheres 15.4
Periaquaductal grey, anterior
nTPM: 14.8
1947 Male, age 18, unknown 16.2
2502 Female, age 75, unknown 14.5
1795 Male, age 51, unknown 13.9
Periaquaductal grey, dorsal
nTPM: 13.3
1840 Male, age 53, unknown 14.7
2464 Female, age 72, unknown 13.7
2850 Male, age 76, both hemispheres 12.9
1831 Male, age 72, unknown 11.9
Periaquaductal grey, lateral
nTPM: 14.5
2272 Male, age 74, both hemispheres 16.0
2053 Male, age 18, unknown 14.0
2140 Male, age 76, both hemispheres 13.5
Pretectal area
nTPM: 14.5
2224 Female, age 72, unknown 16.4
2273 Male, age 74, both hemispheres 16.3
2667 Female, age 75, unknown 16.0
2825 Male, age 18, unknown 15.0
2007 Male, age 72, unknown 14.6
1817 Female, age 42, unknown 14.5
1944 Female, age 72, unknown 14.5
1815 Male, age 53, unknown 14.3
1816 Male, age 51, unknown 14.0
2316 Male, age 76, right hemisphere 12.6
2407 Male, age 75, both hemispheres 11.6
Red nucleus
nTPM: 13.4
1821 Female, age 72, unknown 15.5
2725 Female, age 75, unknown 14.8
1904 Male, age 53, unknown 14.4
1954 Female, age 42, unknown 14.3
2503 Female, age 72, unknown 14.2
1865 Male, age 51, unknown 13.5
2769 Male, age 72, unknown 13.3
2588 Male, age 74, left hemisphere 12.9
2227 Male, age 72, unknown 12.8
2823 Male, age 76, right hemisphere 12.4
2785 Male, age 18, unknown 11.9
2584 Male, age 75, left hemisphere 10.9
Substantia nigra
nTPM: 12.8
2241 Male, age 72, unknown 16.0
1889 Female, age 72, unknown 15.1
1916 Female, age 42, unknown 14.4
1851 Male, age 51, unknown 13.8
1941 Male, age 53, unknown 12.9
2699 Male, age 18, unknown 12.1
2409 Female, age 72, unknown 11.4
2583 Male, age 75, right hemisphere 11.4
2665 Male, age 74, both hemispheres 10.7
2590 Female, age 75, unknown 10.5
Superior colliculus
nTPM: 13.5
1796 Male, age 53, unknown 15.6
2587 Male, age 74, left hemisphere 14.9
1895 Male, age 76, right hemisphere 14.8
2087 Female, age 72, unknown 14.3
2261 Male, age 18, unknown 14.3
1839 Male, age 51, unknown 13.6
2668 Female, age 75, unknown 13.5
1913 Female, age 42, unknown 12.4
1995 Male, age 72, unknown 11.2
2664 Male, age 75, both hemispheres 10.0
Ventral tegmental area
nTPM: 14.6
2410 Female, age 72, unknown 17.1
2223 Female, age 72, unknown 15.4
1915 Female, age 42, unknown 14.4
2218 Male, age 76, both hemispheres 14.4
1942 Male, age 51, unknown 14.0
2021 Male, age 53, unknown 12.1

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 68.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 68.3
FF:10158-103A5 76 years, female 68.3

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